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The map label for this gene is rimN [H]

Identifier: 146300267

GI number: 146300267

Start: 2997374

End: 2997943

Strand: Reverse

Name: rimN [H]

Synonym: Fjoh_2512

Alternate gene names: 146300267

Gene position: 2997943-2997374 (Counterclockwise)

Preceding gene: 146300272

Following gene: 146300265

Centisome position: 49.17

GC content: 34.56

Gene sequence:

>570_bases
ATGGATACTATAAATCAAGAAATAATCAACGCTTACGAAGTTATAAAAGAAGGCGGAATCATACTTTATCCAACTGATAC
CGTTTGGGGAATTGGCTGTGATGCGACGAATCCGGAAGCTGTTGCAAAAATATACAAGTTAAAACAACGTGCCGAAACAC
AAAGCATGATCGTTTTAATGAATGGAGAAAAAATGATGTACAATGTTTTTAAGAATATTCCCGAAGTCGCATGGCAGATT
TTAGATTTATCTGAAAAACCAACAACATTAATCCTGGACGATGCCAGAAATGTAGCTCACAATGTTATTTCTGCAGATAA
ATCACTTGGAGTTAGATTAGTAAAAGAGCCTTTTTGCTACAAACTAATGGAAAGAATGAAAAAACCTTTGGTTTCTACAT
CGGCAAATATTTCCGGACAGCCAACACCAATGTCTTTTAAAGAGATCAGTCCTGAAATTATTAATGGAGTCGATTATGTC
GTAAAACTAAATCAGGATAAAGTTGCCGGAAAACCTTCGACAATTATAAAACTGACAAATGATTCTCAGGTAAAAATTAT
TCGAAAATAG

Upstream 100 bases:

>100_bases
GCATTTTTTCATTAAACTCAATTACTTTTTCAAACATCTTTTTTTTGCGTTTATTATTTACCTTTGCATTTCTTTATCTT
TAAAGAACAAATTACTTATT

Downstream 100 bases:

>100_bases
AACTTAAATTAAAAAGCCGGATCAAATTGTTTTTTGATCCGGCTTTTTATTATTTTAAAAAATGCAAACTCAGAGTTGTA
CATCTTTTTAAACATTTTTT

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MDTINQEIINAYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMIVLMNGEKMMYNVFKNIPEVAWQI
LDLSEKPTTLILDDARNVAHNVISADKSLGVRLVKEPFCYKLMERMKKPLVSTSANISGQPTPMSFKEISPEIINGVDYV
VKLNQDKVAGKPSTIIKLTNDSQVKIIRK

Sequences:

>Translated_189_residues
MDTINQEIINAYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMIVLMNGEKMMYNVFKNIPEVAWQI
LDLSEKPTTLILDDARNVAHNVISADKSLGVRLVKEPFCYKLMERMKKPLVSTSANISGQPTPMSFKEISPEIINGVDYV
VKLNQDKVAGKPSTIIKLTNDSQVKIIRK
>Mature_189_residues
MDTINQEIINAYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMIVLMNGEKMMYNVFKNIPEVAWQI
LDLSEKPTTLILDDARNVAHNVISADKSLGVRLVKEPFCYKLMERMKKPLVSTSANISGQPTPMSFKEISPEIINGVDYV
VKLNQDKVAGKPSTIIKLTNDSQVKIIRK

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=191, Percent_Identity=27.2251308900524, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI2367210, Length=151, Percent_Identity=29.1390728476821, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21157; Mature: 21157

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTINQEIINAYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMIVLM
CCCHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEE
NGEKMMYNVFKNIPEVAWQILDLSEKPTTLILDDARNVAHNVISADKSLGVRLVKEPFCY
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCHHCCHHHHCCHHHH
KLMERMKKPLVSTSANISGQPTPMSFKEISPEIINGVDYVVKLNQDKVAGKPSTIIKLTN
HHHHHHHCCHHCCCCCCCCCCCCCCHHHCCHHHHCCCEEEEEECCCCCCCCCCEEEEECC
DSQVKIIRK
CCEEEEEEC
>Mature Secondary Structure
MDTINQEIINAYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMIVLM
CCCHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEE
NGEKMMYNVFKNIPEVAWQILDLSEKPTTLILDDARNVAHNVISADKSLGVRLVKEPFCY
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCHHCCHHHHCCHHHH
KLMERMKKPLVSTSANISGQPTPMSFKEISPEIINGVDYVVKLNQDKVAGKPSTIIKLTN
HHHHHHHCCHHCCCCCCCCCCCCCCHHHCCHHHHCCCEEEEEECCCCCCCCCCEEEEECC
DSQVKIIRK
CCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA