| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is uvrA [H]
Identifier: 146300184
GI number: 146300184
Start: 2906452
End: 2909247
Strand: Reverse
Name: uvrA [H]
Synonym: Fjoh_2429
Alternate gene names: 146300184
Gene position: 2909247-2906452 (Counterclockwise)
Preceding gene: 146300193
Following gene: 146300177
Centisome position: 47.72
GC content: 35.62
Gene sequence:
>2796_bases ATGCAAATTGATCTTTCTACACTCGACCCAAAGCAAAATATTATAATAAAGGGCGCACAAGTACATAATTTAAAAAATGT AGATGTTGCCATTCCGCGAAACAAACTCGTTGTTATTACAGGGCTTTCGGGGTCGGGAAAATCAAGTTTGGCTTTTGATA CTTTATATGCCGAAGGACAGCGTCGTTATGTTGAAAGTTTGTCATCATATGCACGTCAGTTCCTTGGACGTTTAGATAAA CCAAAAGTTGAATATATAAAAGGGATTGCTCCTGCAATTGCTATTGAGCAAAAAGTAAATACAACCAATGCCCGCTCAAC GGTTGGAACTTCTACAGAAATATACGATTACATTAAACTTTTATTTGCCAGAATTGGAAGAACTTATTCGCCAATTTCAG GTCAGGAAGTCAAAAAAAATACTGTAACAGATGTTGTTTCTGATGTTAAAACGCTCGAAATCGACAGCAGATGGCTTCTT CTTGCTCCTATTCATTTAGAAGAAGGACGACAGCTTGAAGATAAACTAAAAATACTTTTGCAGCAGGGTTTTGCACGTAT TTTGGTTGGAAATGAAATGGTTCGTTTAGATGAATTTTCTACAGAAAACATTCATGAATTAGACAATAAGGATATTCTCT TAATTATTGACCGTATTGTAGTTAAGGAAGAAGAAGAATTTTACAACCGTCTTTCAGATGCTGTACAAACAGCATTTTTT GAAGGAAAAGGAATTTGTTACCTGCAAGAAGTGGGTACAGATAAAAGATTTTCTTATTCTAACAATTTTGAATTAGACGG AATTTCGTTTCTGGAACCAAACGTACATTTGTTCAGCTTTAATAATCCTTATGGAGCTTGTCCTGTTTGTGAAGGTTATG GAAATATTATTGGTATTGATGCTGATCTTGTAGTTCCAAACACTTCTTTATCTGTTTTTGAAAGTGCTATTTATCCTTGG CGCGGCGACAGTATGAGCTGGTATAAAGACGAATTGGTTAAACACGCTTATAAATTCGATTTCCCAATTCATAAGCCTTA TTTTGAACTTTCAGAAAGTCAAAAAGATTTAATCTGGACTGGAAATCAATATTTTCAGGGATTAAATGATTTCTTTAGAG AATTAGAAGAGAAAAATTATAAAATACAAAACCGTGTGATGCTTTCTCGTTATCGCGGGAAAACAAAATGCCACGCCTGC CGTGGGAAACGTTTACGCGAAGAAGCTTCATACGTAAAAATTGGAGGAAAAACGGTTTCAGATTTAGTAGATCTTCCTAT TAAGCATTTGGTTACATTTTTTAAAAATCTGGAATTAAACCCATACGAACAGCAGATCGCAAAGCGTTTAATGGTAGAAA TCAACAATCGTTTGTCATTTCTAACCGAAGTTGGTTTAGATTATTTAACCTTAAATAGAAATTCTTCTACACTTTCTGGA GGAGAATCACAGCGTATAAACCTTGCTACTTCTTTAGGAAGCAGTTTAGTGGGCTCAATGTATATTCTGGATGAACCAAG TATTGGCCTGCATCCAAAAGATTCAGAACGATTGATAAAAGTTCTCCTTTCACTTCGTGATTTAGGAAATACCGTAATTG TGGTAGAACATGATGAAGACATCATGAAAGCAGCTGATATGATTATTGATATTGGCCCGGAAGCCGGAACTTTTGGAGGC CAGCTAGTTGCTCAGGGAACTTATCCTGAAATTTTAAAATCAGATTCGCTTACTTCTAAATACCTGAACGGCGATCTTGA AATTTCTGTTCCAAAGAAAAGACGAAAATTCAAAAATCATATTGATATAATTGGTGCCCGAGAAAACAACCTGAAAAATA TCAATGTTACTTTTCCTCTTGATATTTTAACAGTTGTAACCGGAGTTTCAGGAAGCGGAAAAAGTACTTTGATTAAAAAG ATCTTATTTCCTGCCATGCAGAAAAAACTGGAGAATGCAGCCGAAAAAGCAGGTCAGTTTAGTGAACTTTCAGGTTCTTT TTCGCAGATTAAGCATATCGAATATGTAGATCAAAATCCTATTGGAAGAAGCTCTAGATCGAATCCAGTTACTTACATAA AAGCTTATGATGATATCCGTGATTTATACGCCAAAGAAAAATTATCCAAAATAAGAGGTTATCAGGCAAAACATTTCTCT TTTAATGTTGATGGCGGCCGATGCGAAACTTGTAAAGGAGAAGGCTCTATAAACGTTGAAATGGTCTTTATGGCCGATGT TTCGCTGCCTTGTGAAACTTGCGGCGGTAAACGATTTAAAAAAGAGATTCTGGAAGTGACTTTTGATAATCAAAACATCA ACGATGTCCTTACCATGACTATTGATGATGCAATTGCTTTTTTTGAAAAAAACAAACAATCTAAAATCACACAAAAATTA CAACCTCTACAGGATGTAGGTTTAGGATATGTACAATTAGGGCAATCTTCTTCTACCCTTTCAGGCGGTGAAGCACAGCG AATTAAACTGGCTTCCTTTTTAGTAAAAGGTGCTACAAAAGACAAAGCTTTGTTTGTTTTTGATGAACCAACAACTGGAC TGCATTTTCATGATATTAAAAAGCTTTTAGCTTCATTTGATGCTTTAATCGAAAAAGGACATTCGATAATTGTAATTGAG CATAATCTTGACCTGATTAAATGTGCCGACTGGATTATAGATTTAGGCCCGGAAGGCGGTGAAAACGGCGGTCATTTATT AGCAGCCGGAACTCCCGAAGATATAGTTAAGGTTAAAGAATCGGTTACTGGGGTTTATTTGAAAGATAAATTATAG
Upstream 100 bases:
>100_bases TAATCAGATGTTAACATGGTAATTCTGTTAAGATTTGGAACAATATCCTTAACAAAACTCTGCTTAAAATTGATTACTTT TGTAAAAATTGACTTTTTTT
Downstream 100 bases:
>100_bases AAAAGGTTCTGTGAGATACTAAGCTTTTTTTAGAGCTTAGCTGACTAAAAATAAAAATTCCAAATTCCGATGACTTATTA ATCATATCTGGAATTTGGAA
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 931; Mature: 931
Protein sequence:
>931_residues MQIDLSTLDPKQNIIIKGAQVHNLKNVDVAIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGRLDK PKVEYIKGIAPAIAIEQKVNTTNARSTVGTSTEIYDYIKLLFARIGRTYSPISGQEVKKNTVTDVVSDVKTLEIDSRWLL LAPIHLEEGRQLEDKLKILLQQGFARILVGNEMVRLDEFSTENIHELDNKDILLIIDRIVVKEEEEFYNRLSDAVQTAFF EGKGICYLQEVGTDKRFSYSNNFELDGISFLEPNVHLFSFNNPYGACPVCEGYGNIIGIDADLVVPNTSLSVFESAIYPW RGDSMSWYKDELVKHAYKFDFPIHKPYFELSESQKDLIWTGNQYFQGLNDFFRELEEKNYKIQNRVMLSRYRGKTKCHAC RGKRLREEASYVKIGGKTVSDLVDLPIKHLVTFFKNLELNPYEQQIAKRLMVEINNRLSFLTEVGLDYLTLNRNSSTLSG GESQRINLATSLGSSLVGSMYILDEPSIGLHPKDSERLIKVLLSLRDLGNTVIVVEHDEDIMKAADMIIDIGPEAGTFGG QLVAQGTYPEILKSDSLTSKYLNGDLEISVPKKRRKFKNHIDIIGARENNLKNINVTFPLDILTVVTGVSGSGKSTLIKK ILFPAMQKKLENAAEKAGQFSELSGSFSQIKHIEYVDQNPIGRSSRSNPVTYIKAYDDIRDLYAKEKLSKIRGYQAKHFS FNVDGGRCETCKGEGSINVEMVFMADVSLPCETCGGKRFKKEILEVTFDNQNINDVLTMTIDDAIAFFEKNKQSKITQKL QPLQDVGLGYVQLGQSSSTLSGGEAQRIKLASFLVKGATKDKALFVFDEPTTGLHFHDIKKLLASFDALIEKGHSIIVIE HNLDLIKCADWIIDLGPEGGENGGHLLAAGTPEDIVKVKESVTGVYLKDKL
Sequences:
>Translated_931_residues MQIDLSTLDPKQNIIIKGAQVHNLKNVDVAIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGRLDK PKVEYIKGIAPAIAIEQKVNTTNARSTVGTSTEIYDYIKLLFARIGRTYSPISGQEVKKNTVTDVVSDVKTLEIDSRWLL LAPIHLEEGRQLEDKLKILLQQGFARILVGNEMVRLDEFSTENIHELDNKDILLIIDRIVVKEEEEFYNRLSDAVQTAFF EGKGICYLQEVGTDKRFSYSNNFELDGISFLEPNVHLFSFNNPYGACPVCEGYGNIIGIDADLVVPNTSLSVFESAIYPW RGDSMSWYKDELVKHAYKFDFPIHKPYFELSESQKDLIWTGNQYFQGLNDFFRELEEKNYKIQNRVMLSRYRGKTKCHAC RGKRLREEASYVKIGGKTVSDLVDLPIKHLVTFFKNLELNPYEQQIAKRLMVEINNRLSFLTEVGLDYLTLNRNSSTLSG GESQRINLATSLGSSLVGSMYILDEPSIGLHPKDSERLIKVLLSLRDLGNTVIVVEHDEDIMKAADMIIDIGPEAGTFGG QLVAQGTYPEILKSDSLTSKYLNGDLEISVPKKRRKFKNHIDIIGARENNLKNINVTFPLDILTVVTGVSGSGKSTLIKK ILFPAMQKKLENAAEKAGQFSELSGSFSQIKHIEYVDQNPIGRSSRSNPVTYIKAYDDIRDLYAKEKLSKIRGYQAKHFS FNVDGGRCETCKGEGSINVEMVFMADVSLPCETCGGKRFKKEILEVTFDNQNINDVLTMTIDDAIAFFEKNKQSKITQKL QPLQDVGLGYVQLGQSSSTLSGGEAQRIKLASFLVKGATKDKALFVFDEPTTGLHFHDIKKLLASFDALIEKGHSIIVIE HNLDLIKCADWIIDLGPEGGENGGHLLAAGTPEDIVKVKESVTGVYLKDKL >Mature_931_residues MQIDLSTLDPKQNIIIKGAQVHNLKNVDVAIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGRLDK PKVEYIKGIAPAIAIEQKVNTTNARSTVGTSTEIYDYIKLLFARIGRTYSPISGQEVKKNTVTDVVSDVKTLEIDSRWLL LAPIHLEEGRQLEDKLKILLQQGFARILVGNEMVRLDEFSTENIHELDNKDILLIIDRIVVKEEEEFYNRLSDAVQTAFF EGKGICYLQEVGTDKRFSYSNNFELDGISFLEPNVHLFSFNNPYGACPVCEGYGNIIGIDADLVVPNTSLSVFESAIYPW RGDSMSWYKDELVKHAYKFDFPIHKPYFELSESQKDLIWTGNQYFQGLNDFFRELEEKNYKIQNRVMLSRYRGKTKCHAC RGKRLREEASYVKIGGKTVSDLVDLPIKHLVTFFKNLELNPYEQQIAKRLMVEINNRLSFLTEVGLDYLTLNRNSSTLSG GESQRINLATSLGSSLVGSMYILDEPSIGLHPKDSERLIKVLLSLRDLGNTVIVVEHDEDIMKAADMIIDIGPEAGTFGG QLVAQGTYPEILKSDSLTSKYLNGDLEISVPKKRRKFKNHIDIIGARENNLKNINVTFPLDILTVVTGVSGSGKSTLIKK ILFPAMQKKLENAAEKAGQFSELSGSFSQIKHIEYVDQNPIGRSSRSNPVTYIKAYDDIRDLYAKEKLSKIRGYQAKHFS FNVDGGRCETCKGEGSINVEMVFMADVSLPCETCGGKRFKKEILEVTFDNQNINDVLTMTIDDAIAFFEKNKQSKITQKL QPLQDVGLGYVQLGQSSSTLSGGEAQRIKLASFLVKGATKDKALFVFDEPTTGLHFHDIKKLLASFDALIEKGHSIIVIE HNLDLIKCADWIIDLGPEGGENGGHLLAAGTPEDIVKVKESVTGVYLKDKL
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=951, Percent_Identity=45.2155625657203, Blast_Score=764, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104275; Mature: 104275
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIDLSTLDPKQNIIIKGAQVHNLKNVDVAIPRNKLVVITGLSGSGKSSLAFDTLYAEGQ CEEECCCCCCCCCEEEECCEECCCCCCEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHH RRYVESLSSYARQFLGRLDKPKVEYIKGIAPAIAIEQKVNTTNARSTVGTSTEIYDYIKL HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH LFARIGRTYSPISGQEVKKNTVTDVVSDVKTLEIDSRWLLLAPIHLEEGRQLEDKLKILL HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECCCCCCHHHHHHHHH QQGFARILVGNEMVRLDEFSTENIHELDNKDILLIIDRIVVKEEEEFYNRLSDAVQTAFF HHCHHEEEECCCEEEECCCCCCCHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHC EGKGICYLQEVGTDKRFSYSNNFELDGISFLEPNVHLFSFNNPYGACPVCEGYGNIIGID CCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEC ADLVVPNTSLSVFESAIYPWRGDSMSWYKDELVKHAYKFDFPIHKPYFELSESQKDLIWT CEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEE GNQYFQGLNDFFRELEEKNYKIQNRVMLSRYRGKTKCHACRGKRLREEASYVKIGGKTVS CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCHHH DLVDLPIKHLVTFFKNLELNPYEQQIAKRLMVEINNRLSFLTEVGLDYLTLNRNSSTLSG HHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC GESQRINLATSLGSSLVGSMYILDEPSIGLHPKDSERLIKVLLSLRDLGNTVIVVEHDED CCCCEEEHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHH IMKAADMIIDIGPEAGTFGGQLVAQGTYPEILKSDSLTSKYLNGDLEISVPKKRRKFKNH HHHHHHHEEECCCCCCCCCCEEEECCCCHHHHCCCCHHHHHCCCCEEEECCHHHHHHHCC IDIIGARENNLKNINVTFPLDILTVVTGVSGSGKSTLIKKILFPAMQKKLENAAEKAGQF CEEEECCCCCCCEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH SELSGSFSQIKHIEYVDQNPIGRSSRSNPVTYIKAYDDIRDLYAKEKLSKIRGYQAKHFS HHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEE FNVDGGRCETCKGEGSINVEMVFMADVSLPCETCGGKRFKKEILEVTFDNQNINDVLTMT EECCCCCEECCCCCCCEEEEEEEEEECCCCHHHCCCHHHHHHHHEEEECCCCCCCEEEEE IDDAIAFFEKNKQSKITQKLQPLQDVGLGYVQLGQSSSTLSGGEAQRIKLASFLVKGATK HHHHHHHHHCCCHHHHHHHHCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC DKALFVFDEPTTGLHFHDIKKLLASFDALIEKGHSIIVIEHNLDLIKCADWIIDLGPEGG CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEHHHHHEECCCCCC ENGGHLLAAGTPEDIVKVKESVTGVYLKDKL CCCCEEEECCCHHHHHHHHHHHCEEEEECCC >Mature Secondary Structure MQIDLSTLDPKQNIIIKGAQVHNLKNVDVAIPRNKLVVITGLSGSGKSSLAFDTLYAEGQ CEEECCCCCCCCCEEEECCEECCCCCCEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHH RRYVESLSSYARQFLGRLDKPKVEYIKGIAPAIAIEQKVNTTNARSTVGTSTEIYDYIKL HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH LFARIGRTYSPISGQEVKKNTVTDVVSDVKTLEIDSRWLLLAPIHLEEGRQLEDKLKILL HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECCCCCCHHHHHHHHH QQGFARILVGNEMVRLDEFSTENIHELDNKDILLIIDRIVVKEEEEFYNRLSDAVQTAFF HHCHHEEEECCCEEEECCCCCCCHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHC EGKGICYLQEVGTDKRFSYSNNFELDGISFLEPNVHLFSFNNPYGACPVCEGYGNIIGID CCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEC ADLVVPNTSLSVFESAIYPWRGDSMSWYKDELVKHAYKFDFPIHKPYFELSESQKDLIWT CEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEE GNQYFQGLNDFFRELEEKNYKIQNRVMLSRYRGKTKCHACRGKRLREEASYVKIGGKTVS CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCHHH DLVDLPIKHLVTFFKNLELNPYEQQIAKRLMVEINNRLSFLTEVGLDYLTLNRNSSTLSG HHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC GESQRINLATSLGSSLVGSMYILDEPSIGLHPKDSERLIKVLLSLRDLGNTVIVVEHDED CCCCEEEHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHH IMKAADMIIDIGPEAGTFGGQLVAQGTYPEILKSDSLTSKYLNGDLEISVPKKRRKFKNH HHHHHHHEEECCCCCCCCCCEEEECCCCHHHHCCCCHHHHHCCCCEEEECCHHHHHHHCC IDIIGARENNLKNINVTFPLDILTVVTGVSGSGKSTLIKKILFPAMQKKLENAAEKAGQF CEEEECCCCCCCEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH SELSGSFSQIKHIEYVDQNPIGRSSRSNPVTYIKAYDDIRDLYAKEKLSKIRGYQAKHFS HHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEE FNVDGGRCETCKGEGSINVEMVFMADVSLPCETCGGKRFKKEILEVTFDNQNINDVLTMT EECCCCCEECCCCCCCEEEEEEEEEECCCCHHHCCCHHHHHHHHEEEECCCCCCCEEEEE IDDAIAFFEKNKQSKITQKLQPLQDVGLGYVQLGQSSSTLSGGEAQRIKLASFLVKGATK HHHHHHHHHCCCHHHHHHHHCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC DKALFVFDEPTTGLHFHDIKKLLASFDALIEKGHSIIVIEHNLDLIKCADWIIDLGPEGG CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEHHHHHEECCCCCC ENGGHLLAAGTPEDIVKVKESVTGVYLKDKL CCCCEEEECCCHHHHHHHHHHHCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11466286 [H]