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The map label for this gene is rpoE [C]

Identifier: 146300151

GI number: 146300151

Start: 2870198

End: 2870692

Strand: Reverse

Name: rpoE [C]

Synonym: Fjoh_2396

Alternate gene names: 146300151

Gene position: 2870692-2870198 (Counterclockwise)

Preceding gene: 146300152

Following gene: 146300150

Centisome position: 47.08

GC content: 33.54

Gene sequence:

>495_bases
ATGAGCGAAAATCTAGAACAGTCATTTGTTGCACAATTGCAGGCAAATCAGAATATAATCCACAAGATTTGTAGGTTGTA
TACTGATGGCGAAGACGCTCATAAAGATTTATTTCAGGAAATCACCATTCAGCTCTGGAAAGCTTATCCAAAATTTAGAG
GCGACAGTAAATTTTCGACCTGGACGTACCGTGTTGCTTTAAATACAGCAATTACATTATACCGAAAAACCAAAAGGACC
ATATCTACCGTAGATTATGAAAGTCATCAGCACTTTGTAAAAGATGTTGATTACAATTATGAAGAGGAAGAACAGATAAA
ATTGATGTATAAAGCAGTTTATCAGCTTAATGACATCGAAAAAGCATTAGTTTTTATGTATTTAGAAGACAAAGATTATC
AAGAAATAGCCGAAACCTTAGGAATCAGCGAAGTGAATGCGCGTGTGAAAATGAATAGAATTAAAGGGAAACTTAAAAAA
ATACTAAATCCTTAA

Upstream 100 bases:

>100_bases
TTTGTATTAAACAACTAAAAGAAATTATAATCTTTTAACGTGCGTCAAAAAAAATAAATTTAACTGTAACAAAAATGATT
TCATAACTACTAATACTTTT

Downstream 100 bases:

>100_bases
AAATTATTATGAAAGAACTGGATTTATTAAAAAAAGACTGGAAAAAGAACTCTGATTCTTTTCAACAAATTTCTGAAACA
GAAATCTACAGAATGATTCA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Ecf-Type Sigma Factor; RNA Polymerase; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MSENLEQSFVAQLQANQNIIHKICRLYTDGEDAHKDLFQEITIQLWKAYPKFRGDSKFSTWTYRVALNTAITLYRKTKRT
ISTVDYESHQHFVKDVDYNYEEEEQIKLMYKAVYQLNDIEKALVFMYLEDKDYQEIAETLGISEVNARVKMNRIKGKLKK
ILNP

Sequences:

>Translated_164_residues
MSENLEQSFVAQLQANQNIIHKICRLYTDGEDAHKDLFQEITIQLWKAYPKFRGDSKFSTWTYRVALNTAITLYRKTKRT
ISTVDYESHQHFVKDVDYNYEEEEQIKLMYKAVYQLNDIEKALVFMYLEDKDYQEIAETLGISEVNARVKMNRIKGKLKK
ILNP
>Mature_163_residues
SENLEQSFVAQLQANQNIIHKICRLYTDGEDAHKDLFQEITIQLWKAYPKFRGDSKFSTWTYRVALNTAITLYRKTKRTI
STVDYESHQHFVKDVDYNYEEEEQIKLMYKAVYQLNDIEKALVFMYLEDKDYQEIAETLGISEVNARVKMNRIKGKLKKI
LNP

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19485; Mature: 19354

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENLEQSFVAQLQANQNIIHKICRLYTDGEDAHKDLFQEITIQLWKAYPKFRGDSKFST
CCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
WTYRVALNTAITLYRKTKRTISTVDYESHQHFVKDVDYNYEEEEQIKLMYKAVYQLNDIE
EEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KALVFMYLEDKDYQEIAETLGISEVNARVKMNRIKGKLKKILNP
HHHEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SENLEQSFVAQLQANQNIIHKICRLYTDGEDAHKDLFQEITIQLWKAYPKFRGDSKFST
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
WTYRVALNTAITLYRKTKRTISTVDYESHQHFVKDVDYNYEEEEQIKLMYKAVYQLNDIE
EEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KALVFMYLEDKDYQEIAETLGISEVNARVKMNRIKGKLKKILNP
HHHEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA