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The map label for this gene is yqhC [H]

Identifier: 146284545

GI number: 146284545

Start: 29162

End: 30070

Strand: Reverse

Name: yqhC [H]

Synonym: Ent638_4219

Alternate gene names: 146284545

Gene position: 30070-29162 (Counterclockwise)

Preceding gene: 146284549

Following gene: 146284542

Centisome position: 19.06

GC content: 53.14

Gene sequence:

>909_bases
ATGCAGGAATTTTCCGTAGAACAAAGCCTTAAAATGCTTGCTGAGAAAATTAGCGAGATTGCACAATACGATGGTGATTT
CACAACTGCAGTTCCGTCGTTATCGGTGCACCGACGAAATGCACCGACCACTCCCGTGCATTGTATCTATGGCATTGGGT
TAGGTGTGGTTATTCAGGGCAGTAAGGAACTGGTGCTGGGAGGAAAAGTGACTGGCTACCGGGCCGGGCAAACACTCCTC
ACCACACTTGAGCTTCCGGTCGTGTCACATGTTGCGACGGCGACGGCATCCGCACCGTTCCTGGGGATGATGGTCACTAT
TGAGCCCGCGGCTTTGATGCAGACGGCGGCAATGATCCCTTTTCGGCCAGCTGCTAAATCACCGGGTTTTGATCCGTTGG
CCGTTAACGAGCTTGACGCGGGACTTGCTGATACGTTGAGAAGGCTGCTGTCACTGAATGACGAACCACGTTTAATTCAG
CATCTTGCCCCACTCATACAGCAGGAGATCATCATTCGGCTGCTGACGGGACCCTATGGGAGTGCGCTTCGCCATATCGC
ATCACCGGGTTCGCCTGGGCAACAAATATCCGGAGCCGTTGCCTGGCTTAAACAACATTTCACTCAACCAGTCAGCATAG
ATGAGCTGGCTTCCCGCTCGTCGATGAGCACGTCATCCTTTCGTCACCATTTCCGGTCAGTGACAGGGATGAGTCCGCTA
CAGTTTATCAAGAAGCTCAGACTTCAGGAGGCACGACAGCAAATGCTGAACAGCCGTCTTGACGCGGTGAGCGCGGCGAT
AAAAGTAGGCTATGAGAGTGCTTCCCAGTTTAGCCGCGAGTACAGCAGGGAGTTTGGCGAGTCGCCGCAACGTGACATCA
GACGTCTGCGTGAAGAAATAAGCCAGTAA

Upstream 100 bases:

>100_bases
TGAAATGATTTATTTTTCCTGAATTGGGTTATTGGCTTCCATAAATGATATTTTAATTTTTACGTTACTATTGAATCATG
AGATGTGTCAGGACTGAGAG

Downstream 100 bases:

>100_bases
AAAATTCCCCTCAGCATAAATTCAGAAGGGTACTTCTGTGTCCTTTGTACGTAGTCATCCTTTATATAGAGTCACAGATA
ATTTTTGAGTCTGCTTTTCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQEFSVEQSLKMLAEKISEIAQYDGDFTTAVPSLSVHRRNAPTTPVHCIYGIGLGVVIQGSKELVLGGKVTGYRAGQTLL
TTLELPVVSHVATATASAPFLGMMVTIEPAALMQTAAMIPFRPAAKSPGFDPLAVNELDAGLADTLRRLLSLNDEPRLIQ
HLAPLIQQEIIIRLLTGPYGSALRHIASPGSPGQQISGAVAWLKQHFTQPVSIDELASRSSMSTSSFRHHFRSVTGMSPL
QFIKKLRLQEARQQMLNSRLDAVSAAIKVGYESASQFSREYSREFGESPQRDIRRLREEISQ

Sequences:

>Translated_302_residues
MQEFSVEQSLKMLAEKISEIAQYDGDFTTAVPSLSVHRRNAPTTPVHCIYGIGLGVVIQGSKELVLGGKVTGYRAGQTLL
TTLELPVVSHVATATASAPFLGMMVTIEPAALMQTAAMIPFRPAAKSPGFDPLAVNELDAGLADTLRRLLSLNDEPRLIQ
HLAPLIQQEIIIRLLTGPYGSALRHIASPGSPGQQISGAVAWLKQHFTQPVSIDELASRSSMSTSSFRHHFRSVTGMSPL
QFIKKLRLQEARQQMLNSRLDAVSAAIKVGYESASQFSREYSREFGESPQRDIRRLREEISQ
>Mature_302_residues
MQEFSVEQSLKMLAEKISEIAQYDGDFTTAVPSLSVHRRNAPTTPVHCIYGIGLGVVIQGSKELVLGGKVTGYRAGQTLL
TTLELPVVSHVATATASAPFLGMMVTIEPAALMQTAAMIPFRPAAKSPGFDPLAVNELDAGLADTLRRLLSLNDEPRLIQ
HLAPLIQQEIIIRLLTGPYGSALRHIASPGSPGQQISGAVAWLKQHFTQPVSIDELASRSSMSTSSFRHHFRSVTGMSPL
QFIKKLRLQEARQQMLNSRLDAVSAAIKVGYESASQFSREYSREFGESPQRDIRRLREEISQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=301, Percent_Identity=30.2325581395349, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790339, Length=99, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786496, Length=87, Percent_Identity=41.3793103448276, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33033; Mature: 33033

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEFSVEQSLKMLAEKISEIAQYDGDFTTAVPSLSVHRRNAPTTPVHCIYGIGLGVVIQG
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCCHHHHHHHCCCCEEEEC
SKELVLGGKVTGYRAGQTLLTTLELPVVSHVATATASAPFLGMMVTIEPAALMQTAAMIP
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECHHHHHHHHHHCC
FRPAAKSPGFDPLAVNELDAGLADTLRRLLSLNDEPRLIQHLAPLIQQEIIIRLLTGPYG
CCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
SALRHIASPGSPGQQISGAVAWLKQHFTQPVSIDELASRSSMSTSSFRHHFRSVTGMSPL
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHH
QFIKKLRLQEARQQMLNSRLDAVSAAIKVGYESASQFSREYSREFGESPQRDIRRLREEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SQ
CC
>Mature Secondary Structure
MQEFSVEQSLKMLAEKISEIAQYDGDFTTAVPSLSVHRRNAPTTPVHCIYGIGLGVVIQG
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCCHHHHHHHCCCCEEEEC
SKELVLGGKVTGYRAGQTLLTTLELPVVSHVATATASAPFLGMMVTIEPAALMQTAAMIP
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECHHHHHHHHHHCC
FRPAAKSPGFDPLAVNELDAGLADTLRRLLSLNDEPRLIQHLAPLIQQEIIIRLLTGPYG
CCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
SALRHIASPGSPGQQISGAVAWLKQHFTQPVSIDELASRSSMSTSSFRHHFRSVTGMSPL
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHH
QFIKKLRLQEARQQMLNSRLDAVSAAIKVGYESASQFSREYSREFGESPQRDIRRLREEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]