Click here to switch to the map view.

The map label for this gene is ylmE [H]

Identifier: 146284538

GI number: 146284538

Start: 22367

End: 23176

Strand: Reverse

Name: ylmE [H]

Synonym: Ent638_4212

Alternate gene names: 146284538

Gene position: 23176-22367 (Counterclockwise)

Preceding gene: 146284541

Following gene: 146284537

Centisome position: 14.69

GC content: 47.65

Gene sequence:

>810_bases
ATGAAAAATACAGAAAACAGCACCAAACTACTCACTTTACGAGATACCCAGCCCCGTTGCGAAATGCACAATCGCTGGCC
TCGTGCGGAAAGCGTACAGGATTTCATCGACAATCTGGCTGCGGTTCAATCACGGATAGATGCAGCCTGCCAGCGTTCAG
GACGAAATGTTTCTGACGTTCGCCTGCTCCCTGTCAGTAAAACAATGGACGAGAAGCACATTCGAATGGCTCACCAGGCG
GGGTGCAATTTTCTGGGTGAAAATAAAGTGCAGGAAGCCTGGCGAAAATCACAAGCAATGTTAGATCTGACCGATTTGAA
ATGGTCTGTGATTGGTCATCTTCAGTCGAATAAAGCCAAATTAGTAGCCAGATTTGCCAGTGAGTTCCAGGCTCTGGATT
CATTTAATACGGCAGAAATACTCGACAGGCGGCTTCAGGTTGAAGGGCGAACGCTCAATGTTTTTGTTCAGGTGAACACT
TCCGCAGAACCCAGCAAGTTTGGTCTTGCACCGGAAACTGTAGTTGACTTCATGGCGCAATTGAGCACGTTGAAAAACAT
AAAGCTAATAGGGCTGATGACTCTTGCCGAGTTCACCTCAGACGCCGAACGCGTTAGATCTTGCTTCATCCGATTACGCA
AACTGCGCGATCAGCTTGCTAATGTATATGGCAACCTGCAACTCTCAATGGGAATGTCAGGTGACTTCGAGATCGCTATT
GAAGAAGGTGCCAATATCGTGCGCGTTGGTCAGGCGATCTTTGGTGCTCGTTCGCTTCCTGATGAATATTTCTGGCCGAA
AGGAGAATAA

Upstream 100 bases:

>100_bases
TATCACCCGCTGTTTTACCGTTAATGTTCATTGACCTGGTTCAAATTTAAGTTTAGCCTAGGACAATATTAATTGAGTAC
GGAGCTCTTGTCTATCTGCT

Downstream 100 bases:

>100_bases
GCTCTTGATATCCCGAGTTACCCAGGCACAGGGGCTAGCCCGTACTGCCGACATCATTTCCATTCAGTCTCAGGTTGTTT
ATGGGAGCGTAGGTAATAGT

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKNTENSTKLLTLRDTQPRCEMHNRWPRAESVQDFIDNLAAVQSRIDAACQRSGRNVSDVRLLPVSKTMDEKHIRMAHQA
GCNFLGENKVQEAWRKSQAMLDLTDLKWSVIGHLQSNKAKLVARFASEFQALDSFNTAEILDRRLQVEGRTLNVFVQVNT
SAEPSKFGLAPETVVDFMAQLSTLKNIKLIGLMTLAEFTSDAERVRSCFIRLRKLRDQLANVYGNLQLSMGMSGDFEIAI
EEGANIVRVGQAIFGARSLPDEYFWPKGE

Sequences:

>Translated_269_residues
MKNTENSTKLLTLRDTQPRCEMHNRWPRAESVQDFIDNLAAVQSRIDAACQRSGRNVSDVRLLPVSKTMDEKHIRMAHQA
GCNFLGENKVQEAWRKSQAMLDLTDLKWSVIGHLQSNKAKLVARFASEFQALDSFNTAEILDRRLQVEGRTLNVFVQVNT
SAEPSKFGLAPETVVDFMAQLSTLKNIKLIGLMTLAEFTSDAERVRSCFIRLRKLRDQLANVYGNLQLSMGMSGDFEIAI
EEGANIVRVGQAIFGARSLPDEYFWPKGE
>Mature_269_residues
MKNTENSTKLLTLRDTQPRCEMHNRWPRAESVQDFIDNLAAVQSRIDAACQRSGRNVSDVRLLPVSKTMDEKHIRMAHQA
GCNFLGENKVQEAWRKSQAMLDLTDLKWSVIGHLQSNKAKLVARFASEFQALDSFNTAEILDRRLQVEGRTLNVFVQVNT
SAEPSKFGLAPETVVDFMAQLSTLKNIKLIGLMTLAEFTSDAERVRSCFIRLRKLRDQLANVYGNLQLSMGMSGDFEIAI
EEGANIVRVGQAIFGARSLPDEYFWPKGE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=234, Percent_Identity=34.6153846153846, Blast_Score=110, Evalue=1e-24,
Organism=Escherichia coli, GI1789321, Length=236, Percent_Identity=36.4406779661017, Blast_Score=125, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI17533025, Length=217, Percent_Identity=34.5622119815668, Blast_Score=95, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6319435, Length=219, Percent_Identity=36.0730593607306, Blast_Score=103, Evalue=2e-23,
Organism=Drosophila melanogaster, GI45550861, Length=242, Percent_Identity=32.6446280991736, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 30367; Mature: 30367

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTENSTKLLTLRDTQPRCEMHNRWPRAESVQDFIDNLAAVQSRIDAACQRSGRNVSDV
CCCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
RLLPVSKTMDEKHIRMAHQAGCNFLGENKVQEAWRKSQAMLDLTDLKWSVIGHLQSNKAK
EEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCHHH
LVARFASEFQALDSFNTAEILDRRLQVEGRTLNVFVQVNTSAEPSKFGLAPETVVDFMAQ
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCHHCCCCHHHHHHHHHH
LSTLKNIKLIGLMTLAEFTSDAERVRSCFIRLRKLRDQLANVYGNLQLSMGMSGDFEIAI
HHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEE
EEGANIVRVGQAIFGARSLPDEYFWPKGE
CCCCCEEEHHHHHHCCCCCCHHCCCCCCC
>Mature Secondary Structure
MKNTENSTKLLTLRDTQPRCEMHNRWPRAESVQDFIDNLAAVQSRIDAACQRSGRNVSDV
CCCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
RLLPVSKTMDEKHIRMAHQAGCNFLGENKVQEAWRKSQAMLDLTDLKWSVIGHLQSNKAK
EEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCHHH
LVARFASEFQALDSFNTAEILDRRLQVEGRTLNVFVQVNTSAEPSKFGLAPETVVDFMAQ
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCHHCCCCHHHHHHHHHH
LSTLKNIKLIGLMTLAEFTSDAERVRSCFIRLRKLRDQLANVYGNLQLSMGMSGDFEIAI
HHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEE
EEGANIVRVGQAIFGARSLPDEYFWPKGE
CCCCCEEEHHHHHHCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]