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The map label for this gene is ygiD [H]

Identifier: 145299934

GI number: 145299934

Start: 3261702

End: 3262469

Strand: Direct

Name: ygiD [H]

Synonym: ASA_3026

Alternate gene names: 145299934

Gene position: 3261702-3262469 (Clockwise)

Preceding gene: 145299933

Following gene: 145299935

Centisome position: 69.36

GC content: 63.67

Gene sequence:

>768_bases
ATGTCTATCGCCCCCGTCTGGTTTATCTCTCACGGCGCTCCGGATCTGGTTCTGCGCGACCAGCCGGCCACCCACTTCCT
GAAAACATTGCGCCTTGGCGATATCAAGGGACTGGTGGTGATCTCGGCACACTGGTTCAGCCGCACCGACCTGCAGATCA
ACGTCGAGCCCAATCCGGCGCTCATGTATAACTTCTACGGTTTTCCGGAGCCGCTATACCATATACGCTGGCCGGCAACG
AGTCCGCTGTGGTTGCAAGAGGCGGTAGGCGATCAGCTGATGCTGGCGGGCTTGCCGGCTACACAGGTGCGCCGCGAGCT
GGATCACGGCGTCTGGTCGCCGCTCTCCCTGATGGATCCGGCAAGCGAGATCCCCCTGGTGCAGATCTCCATTCCGGCCA
GTTTCAGCCCGGCCCAGCTATGGCAACTGGGGGAAGCGCTGCAGAGCCTGCGCGAACAGGGGATAGGCATACTGGCCTCC
GGCGCCATTACCCACAACCTGCGGGCCCTCGGGCCGGACAACTCGCCGGTGCCCGGCTGGGCAAGCGATTTTGTGAACTG
GCTGGAGCAGACCATGAGCGAGGGTGACAGGCCCGCGCTAGAAGAGTACAGAACGCGAGCCCCGGGAGCGGTGGAAGCAC
ACCCCCATGACGATCACCTGCGCCCGCTGTTTGTGGCCCTGGGGGCCGCCGGCAAGGACAAGCCCCACAAGCTGCACGAC
AGCTGGGATGGCGGCAGCCTCTACATGGGCTCCTACCGGTTCGGTTGA

Upstream 100 bases:

>100_bases
CATCCCAGGCAGATAATGACCCCATCGTCAGTGGCCCGACGCCCTGACCCCGGTTTCGGGTACGCAATGCGTACCGACAC
AGCTTATATGGAGTCTTGTC

Downstream 100 bases:

>100_bases
GCTGCACCTAAGCCGTTGGCTAAACACAGCATCGAATGCAAGCTCGACAGCGTGGGAGCTCAGCACGCAAGTGCAGTGGC
ATCAAGGGATGGAGTATCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSIAPVWFISHGAPDLVLRDQPATHFLKTLRLGDIKGLVVISAHWFSRTDLQINVEPNPALMYNFYGFPEPLYHIRWPAT
SPLWLQEAVGDQLMLAGLPATQVRRELDHGVWSPLSLMDPASEIPLVQISIPASFSPAQLWQLGEALQSLREQGIGILAS
GAITHNLRALGPDNSPVPGWASDFVNWLEQTMSEGDRPALEEYRTRAPGAVEAHPHDDHLRPLFVALGAAGKDKPHKLHD
SWDGGSLYMGSYRFG

Sequences:

>Translated_255_residues
MSIAPVWFISHGAPDLVLRDQPATHFLKTLRLGDIKGLVVISAHWFSRTDLQINVEPNPALMYNFYGFPEPLYHIRWPAT
SPLWLQEAVGDQLMLAGLPATQVRRELDHGVWSPLSLMDPASEIPLVQISIPASFSPAQLWQLGEALQSLREQGIGILAS
GAITHNLRALGPDNSPVPGWASDFVNWLEQTMSEGDRPALEEYRTRAPGAVEAHPHDDHLRPLFVALGAAGKDKPHKLHD
SWDGGSLYMGSYRFG
>Mature_254_residues
SIAPVWFISHGAPDLVLRDQPATHFLKTLRLGDIKGLVVISAHWFSRTDLQINVEPNPALMYNFYGFPEPLYHIRWPATS
PLWLQEAVGDQLMLAGLPATQVRRELDHGVWSPLSLMDPASEIPLVQISIPASFSPAQLWQLGEALQSLREQGIGILASG
AITHNLRALGPDNSPVPGWASDFVNWLEQTMSEGDRPALEEYRTRAPGAVEAHPHDDHLRPLFVALGAAGKDKPHKLHDS
WDGGSLYMGSYRFG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=34.3511450381679, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28203; Mature: 28072

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAPVWFISHGAPDLVLRDQPATHFLKTLRLGDIKGLVVISAHWFSRTDLQINVEPNPA
CCCCEEEEEECCCCCEEEECCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEECCCCE
LMYNFYGFPEPLYHIRWPATSPLWLQEAVGDQLMLAGLPATQVRRELDHGVWSPLSLMDP
EEEEECCCCCCCEEEECCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHCCC
ASEIPLVQISIPASFSPAQLWQLGEALQSLREQGIGILASGAITHNLRALGPDNSPVPGW
HHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHCEEEECCCCCCCCCH
ASDFVNWLEQTMSEGDRPALEEYRTRAPGAVEAHPHDDHLRPLFVALGAAGKDKPHKLHD
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHEECCCCCCCCCCCCC
SWDGGSLYMGSYRFG
CCCCCEEEECCCCCC
>Mature Secondary Structure 
SIAPVWFISHGAPDLVLRDQPATHFLKTLRLGDIKGLVVISAHWFSRTDLQINVEPNPA
CCCEEEEEECCCCCEEEECCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEECCCCE
LMYNFYGFPEPLYHIRWPATSPLWLQEAVGDQLMLAGLPATQVRRELDHGVWSPLSLMDP
EEEEECCCCCCCEEEECCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHCCC
ASEIPLVQISIPASFSPAQLWQLGEALQSLREQGIGILASGAITHNLRALGPDNSPVPGW
HHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHCEEEECCCCCCCCCH
ASDFVNWLEQTMSEGDRPALEEYRTRAPGAVEAHPHDDHLRPLFVALGAAGKDKPHKLHD
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHEECCCCCCCCCCCCC
SWDGGSLYMGSYRFG
CCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]