BacMap

Definition	Corynebacterium glutamicum R chromosome, complete genome.
Accession	NC_009342
Length	3,314,179

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The map label for this gene is yxjF [H]

Identifier: 145297058

GI number: 145297058

Start: 3276746

End: 3277507

Strand: Reverse

Name: yxjF [H]

Synonym: cgR_2954

Alternate gene names: 145297058

Gene position: 3277507-3276746 (Counterclockwise)

Preceding gene: 145297059

Following gene: 145297057

Centisome position: 98.89

GC content: 51.71

Gene sequence:

>762_bases
ATGTCACAACAACGAGTGTTGATCACAGCCGGTGCTGGAGGGATTGGTTGGGCTATAGCTCAAGCATTTCTCAATACAAA
CAGCTTGGTGCACATTGTGGATGTCAGCCCTGAAGCAGTGGAAAAGGTTGCCGGTTCGCATGACAACTTAAGCACCAGCA
TCGGAGACGTTACCTCCGTTGAAGATATAGCCACACTTGCATCAGACTTGGAAAACCGCTGGGGTGGCCTCGATGTGCTG
GTAAGTAATGCCGGTATCGCTGGCCCTACTGCCCCGGTCGAAGAATATGATGCAGACGCGTGGAAATCCGTGATGGATAT
TAACCTCACCGGTTCATTCAATGTTGTGCAACATTTCGTGCCATTGCTGAAAACCTCTGGTGGTTCCATTCTGATCATGT
CTTCACTCGCTGGGCGCTTCGGCTACCCCAACCGCATCGCCTATTCAACATCGAAGTGGGGACTGATTGGCTTTACCAAA
ACGCTGTCACTTGAACTTGGCCCGTTTGGAATTACCGTCAACTCCATTCATCCCGGAGCAGTGAACGGACCGCGCCTTGA
GCAGGTTTTCGCCGCACGAGCGGAAGTTTCTGGGCGAAGTGTTGAGGCTGAGGTGGAAGCCGGTTTGGCTAATCAATCCA
TTAAGAAATTCACCGATCCAGAGGACATTGCGGCCTTGGCGGTCTTCCTTGCAGGACCACATTCGAGGACGATTTCTGGC
CAGCAGTTCCCTATCGATGGAGATTCAAAGGCTGCGCAATAA

Upstream 100 bases:

>100_bases
AGGGCGGGAAGTCAACCCTGATTCTGTAAAAAATCCAGACGCCCTCGCCTGGTTTAAGGAATACGCTCAACAACGATCTG
AAGCAAAGGAATAAAAACTT

Downstream 100 bases:

>100_bases
AAACTTTGAATTAATCAGCGGAACCCCAATGTTTCACGTGAAACATTGGGGTTCCGTACTGTCTTGATAAACTTCCAGTC
GTTGCAAGGCGTGCTTCCAG

Product: 3-ketoacyl-(acyl-carrier-protein) reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSQQRVLITAGAGGIGWAIAQAFLNTNSLVHIVDVSPEAVEKVAGSHDNLSTSIGDVTSVEDIATLASDLENRWGGLDVL
VSNAGIAGPTAPVEEYDADAWKSVMDINLTGSFNVVQHFVPLLKTSGGSILIMSSLAGRFGYPNRIAYSTSKWGLIGFTK
TLSLELGPFGITVNSIHPGAVNGPRLEQVFAARAEVSGRSVEAEVEAGLANQSIKKFTDPEDIAALAVFLAGPHSRTISG
QQFPIDGDSKAAQ

Sequences:

>Translated_253_residues
MSQQRVLITAGAGGIGWAIAQAFLNTNSLVHIVDVSPEAVEKVAGSHDNLSTSIGDVTSVEDIATLASDLENRWGGLDVL
VSNAGIAGPTAPVEEYDADAWKSVMDINLTGSFNVVQHFVPLLKTSGGSILIMSSLAGRFGYPNRIAYSTSKWGLIGFTK
TLSLELGPFGITVNSIHPGAVNGPRLEQVFAARAEVSGRSVEAEVEAGLANQSIKKFTDPEDIAALAVFLAGPHSRTISG
QQFPIDGDSKAAQ
>Mature_252_residues
SQQRVLITAGAGGIGWAIAQAFLNTNSLVHIVDVSPEAVEKVAGSHDNLSTSIGDVTSVEDIATLASDLENRWGGLDVLV
SNAGIAGPTAPVEEYDADAWKSVMDINLTGSFNVVQHFVPLLKTSGGSILIMSSLAGRFGYPNRIAYSTSKWGLIGFTKT
LSLELGPFGITVNSIHPGAVNGPRLEQVFAARAEVSGRSVEAEVEAGLANQSIKKFTDPEDIAALAVFLAGPHSRTISGQ
QFPIDGDSKAAQ

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=211, Percent_Identity=29.8578199052133, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=27.843137254902, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI66933014, Length=230, Percent_Identity=31.304347826087, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI223718074, Length=211, Percent_Identity=31.7535545023697, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI22507405, Length=182, Percent_Identity=31.3186813186813, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=24.9027237354086, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=23.5294117647059, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI150247226, Length=185, Percent_Identity=32.4324324324324, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4758504, Length=198, Percent_Identity=30.8080808080808, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI15277342, Length=171, Percent_Identity=32.7485380116959, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI142976729, Length=201, Percent_Identity=28.8557213930348, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI44680136, Length=242, Percent_Identity=26.4462809917355, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI44680133, Length=242, Percent_Identity=26.4462809917355, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI17738292, Length=242, Percent_Identity=26.4462809917355, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=29.3838862559242, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI119392083, Length=186, Percent_Identity=30.1075268817204, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=25.531914893617, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI40548397, Length=138, Percent_Identity=31.1594202898551, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI214010158, Length=138, Percent_Identity=31.1594202898551, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI214010156, Length=138, Percent_Identity=31.1594202898551, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI22758144, Length=138, Percent_Identity=31.1594202898551, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=24.4094488188976, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI7657478, Length=185, Percent_Identity=30.8108108108108, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI32455239, Length=170, Percent_Identity=30, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI5031765, Length=170, Percent_Identity=30, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI19743808, Length=182, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI4504503, Length=187, Percent_Identity=32.0855614973262, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI83715985, Length=183, Percent_Identity=29.5081967213115, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI302344755, Length=104, Percent_Identity=35.5769230769231, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4504505, Length=196, Percent_Identity=30.1020408163265, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI40254992, Length=178, Percent_Identity=30.3370786516854, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=23.046875, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=30.5882352941176, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=27.8884462151394, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=28.8617886178862, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=24.1106719367589, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI2367365, Length=257, Percent_Identity=29.1828793774319, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787526, Length=247, Percent_Identity=28.3400809716599, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=27.6422764227642, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=26.7716535433071, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788459, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789208, Length=241, Percent_Identity=27.8008298755187, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=26.0700389105058, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367175, Length=186, Percent_Identity=30.1075268817204, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=21.8623481781377, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=28.8537549407115, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=30.3030303030303, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=30.3030303030303, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=29.9242424242424, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=28.2722513089005, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=27.5590551181102, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=27.34375, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=28.7822878228782, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=25.3968253968254, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=25.4980079681275, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=275, Percent_Identity=27.6363636363636, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=229, Percent_Identity=26.6375545851528, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17538182, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=27.5092936802974, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=225, Percent_Identity=27.5555555555556, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=174, Percent_Identity=28.1609195402299, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=22.0883534136546, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=200, Percent_Identity=27, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=29.3893129770992, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=27.7153558052434, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=257, Percent_Identity=26.4591439688716, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=27.6, Blast_Score=86, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=191, Percent_Identity=29.8429319371728, Blast_Score=75, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=163, Percent_Identity=30.6748466257669, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=171, Percent_Identity=26.9005847953216, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=29.8804780876494, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24644337, Length=200, Percent_Identity=31, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=28.1124497991968, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21355319, Length=240, Percent_Identity=27.9166666666667, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=25.1968503937008, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=28.4584980237154, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=26.5873015873016, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281364892, Length=187, Percent_Identity=31.5508021390374, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=27.0161290322581, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24640492, Length=239, Percent_Identity=26.3598326359833, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21358495, Length=188, Percent_Identity=26.5957446808511, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=28.8659793814433, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581726, Length=261, Percent_Identity=29.1187739463602, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28573296, Length=152, Percent_Identity=29.6052631578947, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17737361, Length=193, Percent_Identity=27.979274611399, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26461; Mature: 26330

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQRVLITAGAGGIGWAIAQAFLNTNSLVHIVDVSPEAVEKVAGSHDNLSTSIGDVTSV
CCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCHH
EDIATLASDLENRWGGLDVLVSNAGIAGPTAPVEEYDADAWKSVMDINLTGSFNVVQHFV
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHHHHEEEEEECCCHHHHHHHH
PLLKTSGGSILIMSSLAGRFGYPNRIAYSTSKWGLIGFTKTLSLELGPFGITVNSIHPGA
HHHHCCCCCEEEEEHHHHHCCCCCCEEECCCCCCEEEEEEEEEEEECCCEEEEECCCCCC
VNGPRLEQVFAARAEVSGRSVEAEVEAGLANQSIKKFTDPEDIAALAVFLAGPHSRTISG
CCCHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
QQFPIDGDSKAAQ
CCCCCCCCCCCCC
>Mature Secondary Structure 
SQQRVLITAGAGGIGWAIAQAFLNTNSLVHIVDVSPEAVEKVAGSHDNLSTSIGDVTSV
CCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCHH
EDIATLASDLENRWGGLDVLVSNAGIAGPTAPVEEYDADAWKSVMDINLTGSFNVVQHFV
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHHHHEEEEEECCCHHHHHHHH
PLLKTSGGSILIMSSLAGRFGYPNRIAYSTSKWGLIGFTKTLSLELGPFGITVNSIHPGA
HHHHCCCCCEEEEEHHHHHCCCCCCEEECCCCCCEEEEEEEEEEEECCCEEEEECCCCCC
VNGPRLEQVFAARAEVSGRSVEAEVEAGLANQSIKKFTDPEDIAALAVFLAGPHSRTISG
CCCHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
QQFPIDGDSKAAQ
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]