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The map label for this gene is ygbM [H]

Identifier: 145296071

GI number: 145296071

Start: 2191672

End: 2192448

Strand: Reverse

Name: ygbM [H]

Synonym: cgR_1993

Alternate gene names: 145296071

Gene position: 2192448-2191672 (Counterclockwise)

Preceding gene: 145296072

Following gene: 145296067

Centisome position: 66.15

GC content: 58.69

Gene sequence:

>777_bases
ATGACTTTTAAACTCGCAGCATGCGCAGAGATGATCTACCAGGACCTACCTTTTGAGGAGAGGGTCAAGACGATCTCTGA
TCAGGGATTCCTCGTGGAAATTTGGGACTGGTCCACAAAAGACATCGATGCGCTCGTGGCAACAGGCGCGGAATTTTCCT
CCATGACGGGCTACCTGCGCGGGGATCTGATTACTGAACAGGGCCGCGCGGAGCTCTTGGCAACCGCTTCGGAGTCCTTG
GCGGTGGCGGAAAAGCTCAACTGCCCCCGGCTGAATCTGCATGGAACTGGCCTTGGACCGCAGGGACTACCTGTTACTCC
CATTGAAGTGGTTACCCCAGAAATGTGGCTCTACGCTGCTGAAACGCTCCGCCAGATCGCTGAGCTGGGGGAGCGCGCAG
GCAAGGTTTTCGTGCTGGAAAACCTCAACCTCGCAGTCGATCACCCCGGCACTCCTTTTGCCAAGGCCACTGACACTTTG
GTGCTGGTCAAGGCTGTCAATCACCCGAATCTGCGCCTCAACCTCGATTTGTACCACGCCCAGATTGGCGAAGGAAACCT
CATTGAGCTGCTCCGTGAGGCGCAGCCATTCATCGACGAAATCCAGGTTGCCGATGTCCCCGGCCGGATGGAACCCGGCA
CCGGCGAGATCAACTACCAGGGCGTCGCGAAAGCTCTCGCCGCGATGGGCTACGACGGCGTCATCGGCATGGAGGCGTGG
GCATCGGGCGACTCCAGCGACGCGCTGCAGGCGTTGAAGTCAGCGTTCACGGTCTAA

Upstream 100 bases:

>100_bases
GCGAAGCTGCACGCACCGCACTACTCATCGCACTCGGCGCCATCCGAAGCGTAGAAACCGGCGCAACCATCAACCTTGCT
GAAAGCATCGAGGTTTAACC

Downstream 100 bases:

>100_bases
ATTGCTTATCGACGCACCCTTCCATTTCAGATCCCTATTGGGCTCTCTTCTGCAAAATGATGCCAACCGCACCTAAGTGA
TCTTTATGCTCGGTGAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTFKLAACAEMIYQDLPFEERVKTISDQGFLVEIWDWSTKDIDALVATGAEFSSMTGYLRGDLITEQGRAELLATASESL
AVAEKLNCPRLNLHGTGLGPQGLPVTPIEVVTPEMWLYAAETLRQIAELGERAGKVFVLENLNLAVDHPGTPFAKATDTL
VLVKAVNHPNLRLNLDLYHAQIGEGNLIELLREAQPFIDEIQVADVPGRMEPGTGEINYQGVAKALAAMGYDGVIGMEAW
ASGDSSDALQALKSAFTV

Sequences:

>Translated_258_residues
MTFKLAACAEMIYQDLPFEERVKTISDQGFLVEIWDWSTKDIDALVATGAEFSSMTGYLRGDLITEQGRAELLATASESL
AVAEKLNCPRLNLHGTGLGPQGLPVTPIEVVTPEMWLYAAETLRQIAELGERAGKVFVLENLNLAVDHPGTPFAKATDTL
VLVKAVNHPNLRLNLDLYHAQIGEGNLIELLREAQPFIDEIQVADVPGRMEPGTGEINYQGVAKALAAMGYDGVIGMEAW
ASGDSSDALQALKSAFTV
>Mature_257_residues
TFKLAACAEMIYQDLPFEERVKTISDQGFLVEIWDWSTKDIDALVATGAEFSSMTGYLRGDLITEQGRAELLATASESLA
VAEKLNCPRLNLHGTGLGPQGLPVTPIEVVTPEMWLYAAETLRQIAELGERAGKVFVLENLNLAVDHPGTPFAKATDTLV
LVKAVNHPNLRLNLDLYHAQIGEGNLIELLREAQPFIDEIQVADVPGRMEPGTGEINYQGVAKALAAMGYDGVIGMEAWA
SGDSSDALQALKSAFTV

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=178, Percent_Identity=33.7078651685393, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI300068964, Length=160, Percent_Identity=33.75, Blast_Score=81, Evalue=8e-16,
Organism=Escherichia coli, GI1789095, Length=258, Percent_Identity=29.0697674418605, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786718, Length=247, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=7e-14,
Organism=Drosophila melanogaster, GI17530883, Length=175, Percent_Identity=35.4285714285714, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 27901; Mature: 27770

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKLAACAEMIYQDLPFEERVKTISDQGFLVEIWDWSTKDIDALVATGAEFSSMTGYLR
CCEEHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHH
GDLITEQGRAELLATASESLAVAEKLNCPRLNLHGTGLGPQGLPVTPIEVVTPEMWLYAA
CCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCHHHHHHH
ETLRQIAELGERAGKVFVLENLNLAVDHPGTPFAKATDTLVLVKAVNHPNLRLNLDLYHA
HHHHHHHHHHHHCCEEEEEECCCEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE
QIGEGNLIELLREAQPFIDEIQVADVPGRMEPGTGEINYQGVAKALAAMGYDGVIGMEAW
ECCCCHHHHHHHHHCHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECHHHH
ASGDSSDALQALKSAFTV
CCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TFKLAACAEMIYQDLPFEERVKTISDQGFLVEIWDWSTKDIDALVATGAEFSSMTGYLR
CEEHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHH
GDLITEQGRAELLATASESLAVAEKLNCPRLNLHGTGLGPQGLPVTPIEVVTPEMWLYAA
CCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCHHHHHHH
ETLRQIAELGERAGKVFVLENLNLAVDHPGTPFAKATDTLVLVKAVNHPNLRLNLDLYHA
HHHHHHHHHHHHCCEEEEEECCCEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE
QIGEGNLIELLREAQPFIDEIQVADVPGRMEPGTGEINYQGVAKALAAMGYDGVIGMEAW
ECCCCHHHHHHHHHCHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECHHHH
ASGDSSDALQALKSAFTV
CCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]