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The map label for this gene is intR [C]

Identifier: 145296000

GI number: 145296000

Start: 2112377

End: 2113558

Strand: Direct

Name: intR [C]

Synonym: cgR_1924

Alternate gene names: 145296000

Gene position: 2112377-2113558 (Clockwise)

Preceding gene: 145295999

Following gene: 145296002

Centisome position: 63.74

GC content: 55.41

Gene sequence:

>1182_bases
ATGGCTGTCCAACGACGCCCAAAGGCCGGCAAACTCAAAAACGGCAAAGTGCAATGGGTCGTACGCTACCGCGACCCCTC
CGGAAAAGAACACTCAAAAACGTTTTACACCGAAAAGGAAGCCAAAGCATTCGACACCGAACAATCCCGCGCACTGCGAC
GAAACGAATGGATAAACCCAGTCGACGCAGAAACCACCCTGGGAGTCATCACTCAAGCCTGGGCAGATGAAGCAACCAGA
GATGAAACCATCTCCGTAAGAAAGACCTTCCTCCGAAACCTTGGACCACTGGCAGACATGCCCATATCGGCAGTCAAAAC
GTCCGACATACTCTCATGGCGAAAGAAACTCCTCACCGGAAGAGACTGGCTCGACGGGAGCACTCTTTCTGAATCCACGA
CCGCCAACACAGTCGGACAGCTCATGAGCGTCCTCAAGCGCGCCCAACAAGACCGCATGATCCTGGTCATCCCCACAGTG
CGCGTCCCGAAGTCCGCCCCGGCGCGCGCGATCAGCCGCCAGGAGCTGTTAACTGAGGAGCAGATCCAGAGTATTGCTCA
TGCGGTGGCGACTCCCAAGGGGCATTACAAGGCTCGTCCGTGGTTGAAGTCGATGATTCGAGTTGCCGCGGGCTCGGGGC
TGAGAGTTTCTGAGATTTGTGCGTTGCGTCCTGAGGATGTGAATTTCTTGCGGCATACGATCTCGGTGTCCCGTCAGATG
GGGCGGGGTGGTGTTGCGAAGACTCCGAAGTCTAAGGCTTCTGTGCGGACGATTCCGGTTGCTCGGTGGGTTACTACGGA
GATTGTGGAGTGGATTAAGGAGAATCCGGTGGGTGAGTCTGGGTGGATTTGGACGCGTCCTGTAGGAGAACCTGGGCGTC
CGTTTGATCGGTCAGCGGTGACGCATGGGCTTCTTCCTGCGATCAAGGCTCATGGTTTACGCCAGCATTCGTTTCATGAT
TTTAGGCATTTCTTTGCCAGTGTTTTGATTTTCAAGGGCGTGCCGGCGAATGCCGTACAGGATGCGTTGGGGCATGCGAG
CGCGTCGGTTACGTGGGATACGTATGCCCATATTTTTCCTGGGCAGGATGATGTTATGCGGGATGCTTTGGCTGGGCTGA
ATCTCTTGCGGGATGATTGCGGGATAGGAAAGAAAAAAGCCCCCGGTTCTCACGCTGGGTAA

Upstream 100 bases:

>100_bases
GAAAAGCCCCTCCCCACCCAACAGTTTGGCGACCACGGGTGAAGAGGGGAACAGTATCCAAGAAAATAAATTCCCTAGAC
ACAGGAGAAGTGTATCAATC

Downstream 100 bases:

>100_bases
GAACTCGGGGGCTGGTCAGATAGGTTTTATTCAACCCGACCGCGCTAAGGGCTAGCGCTTCTCCTTAATACGTGCAGCCT
TGCCGCGCAGTTCGCGCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MAVQRRPKAGKLKNGKVQWVVRYRDPSGKEHSKTFYTEKEAKAFDTEQSRALRRNEWINPVDAETTLGVITQAWADEATR
DETISVRKTFLRNLGPLADMPISAVKTSDILSWRKKLLTGRDWLDGSTLSESTTANTVGQLMSVLKRAQQDRMILVIPTV
RVPKSAPARAISRQELLTEEQIQSIAHAVATPKGHYKARPWLKSMIRVAAGSGLRVSEICALRPEDVNFLRHTISVSRQM
GRGGVAKTPKSKASVRTIPVARWVTTEIVEWIKENPVGESGWIWTRPVGEPGRPFDRSAVTHGLLPAIKAHGLRQHSFHD
FRHFFASVLIFKGVPANAVQDALGHASASVTWDTYAHIFPGQDDVMRDALAGLNLLRDDCGIGKKKAPGSHAG

Sequences:

>Translated_393_residues
MAVQRRPKAGKLKNGKVQWVVRYRDPSGKEHSKTFYTEKEAKAFDTEQSRALRRNEWINPVDAETTLGVITQAWADEATR
DETISVRKTFLRNLGPLADMPISAVKTSDILSWRKKLLTGRDWLDGSTLSESTTANTVGQLMSVLKRAQQDRMILVIPTV
RVPKSAPARAISRQELLTEEQIQSIAHAVATPKGHYKARPWLKSMIRVAAGSGLRVSEICALRPEDVNFLRHTISVSRQM
GRGGVAKTPKSKASVRTIPVARWVTTEIVEWIKENPVGESGWIWTRPVGEPGRPFDRSAVTHGLLPAIKAHGLRQHSFHD
FRHFFASVLIFKGVPANAVQDALGHASASVTWDTYAHIFPGQDDVMRDALAGLNLLRDDCGIGKKKAPGSHAG
>Mature_392_residues
AVQRRPKAGKLKNGKVQWVVRYRDPSGKEHSKTFYTEKEAKAFDTEQSRALRRNEWINPVDAETTLGVITQAWADEATRD
ETISVRKTFLRNLGPLADMPISAVKTSDILSWRKKLLTGRDWLDGSTLSESTTANTVGQLMSVLKRAQQDRMILVIPTVR
VPKSAPARAISRQELLTEEQIQSIAHAVATPKGHYKARPWLKSMIRVAAGSGLRVSEICALRPEDVNFLRHTISVSRQMG
RGGVAKTPKSKASVRTIPVARWVTTEIVEWIKENPVGESGWIWTRPVGEPGRPFDRSAVTHGLLPAIKAHGLRQHSFHDF
RHFFASVLIFKGVPANAVQDALGHASASVTWDTYAHIFPGQDDVMRDALAGLNLLRDDCGIGKKKAPGSHAG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43550; Mature: 43419

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVQRRPKAGKLKNGKVQWVVRYRDPSGKEHSKTFYTEKEAKAFDTEQSRALRRNEWINP
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCCHHHHHHCCHHHHHHHHHCCCCC
VDAETTLGVITQAWADEATRDETISVRKTFLRNLGPLADMPISAVKTSDILSWRKKLLTG
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
RDWLDGSTLSESTTANTVGQLMSVLKRAQQDRMILVIPTVRVPKSAPARAISRQELLTEE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
QIQSIAHAVATPKGHYKARPWLKSMIRVAAGSGLRVSEICALRPEDVNFLRHTISVSRQM
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHH
GRGGVAKTPKSKASVRTIPVARWVTTEIVEWIKENPVGESGWIWTRPVGEPGRPFDRSAV
CCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHH
THGLLPAIKAHGLRQHSFHDFRHFFASVLIFKGVPANAVQDALGHASASVTWDTYAHIFP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEECCCEEECC
GQDDVMRDALAGLNLLRDDCGIGKKKAPGSHAG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVQRRPKAGKLKNGKVQWVVRYRDPSGKEHSKTFYTEKEAKAFDTEQSRALRRNEWINP
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCCHHHHHHCCHHHHHHHHHCCCCC
VDAETTLGVITQAWADEATRDETISVRKTFLRNLGPLADMPISAVKTSDILSWRKKLLTG
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
RDWLDGSTLSESTTANTVGQLMSVLKRAQQDRMILVIPTVRVPKSAPARAISRQELLTEE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
QIQSIAHAVATPKGHYKARPWLKSMIRVAAGSGLRVSEICALRPEDVNFLRHTISVSRQM
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHH
GRGGVAKTPKSKASVRTIPVARWVTTEIVEWIKENPVGESGWIWTRPVGEPGRPFDRSAV
CCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHH
THGLLPAIKAHGLRQHSFHDFRHFFASVLIFKGVPANAVQDALGHASASVTWDTYAHIFP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEECCCEEECC
GQDDVMRDALAGLNLLRDDCGIGKKKAPGSHAG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]