Click here to switch to the map view.

The map label for this gene is yifB [C]

Identifier: 145295901

GI number: 145295901

Start: 2028177

End: 2029280

Strand: Reverse

Name: yifB [C]

Synonym: cgR_1826

Alternate gene names: 145295901

Gene position: 2029280-2028177 (Counterclockwise)

Preceding gene: 145295902

Following gene: 145295900

Centisome position: 61.23

GC content: 57.34

Gene sequence:

>1104_bases
ATGGCGTCACAACAGATCCGCTATCCATTCTCCGCAGTTGTGGGACAAGACGAGCTTCGGCTTGCGTTGATCCTCACTGC
GATTTCCCCACGCATTGGTGGCGTGGTGATTCGAGGTGAGAAGGGTACAGCGAAAACTACCACTGTGCGTGCTTTTGCTG
GTCTTTTAGGTGATGCCCCTTTGGTGAACTTGCCTCTCGGATCCACGGAGGATCGTGTGGTGGGTTCCCTCAACATGGAA
ACTGTGTTGACCACCGGCCGTGCGGAATATCAGCCAGGTTTGCTCGCGCAGGCTGATGGCGGTGTGCTGTATGTCGATGA
GGTCAACCTCTTGGCGGATCACCTGGTGGATGCTCTGCTCGATGCAGCTGCAAGCGGTCGCGTCAGCATTGAGCGTGACG
GTATTTCGCATTCTTCACCAGCAAACTTTGTGTTGGTGGGCACCATGAATCCGGAGGAAGGCGAACTGCGCCCGCAGCTG
CTGGACCGTTTCGGTTTGGCTGTGGATGTTGCTGCCTCCACTAACCCTGAGGTGCGCGTGGAGATCATTCGCCGCCGGCT
TGATTTTGAAAACGCTCCTGAGCAGTTCATGGCTAAGTGGGCTGAGCAAGATGCGGACACCTCCAACCGTATTTTGGCGG
CTAAGGATTTGCTGCCTGGTGTGGAGTTGCCGGATCTGATCTTGTCGCAGATTGCGTGGTTGTGTGCACGTATTGAGGTC
GACGGTATGCGCGCTGACCTGGTGATCACGCGTACCGCACTTGCTCACGCCGCGTGGGCTGGACGCACTGTGGTTACGGA
AGAAGACGTGGAGATCGCAGCTCGCCTGGCGTTGCCGCACCGCCGTCGCCGTAATCCTTTTGATGCTCCAGAAATGGAGG
AGCGCAAGCTTCAGGAAACCCTGCAGGAAGCTCGGGACTTCTTCAAAGACAATGAGGACAAGGGACCTGCTGCCAAGATC
ACGGATGAGGAAACCGGGGCAGAGGCCTTCACCGATACCGACAATCCCACCGAGGAAGACGGTTTGCAGGGAACTGCGCA
GGCGAAGGCGCAGACTACTGGAAAGGTAGGTACTGCCGGATCCGGCGACCCCTTTCGCTCCTAG

Upstream 100 bases:

>100_bases
AAAACCTTAAGTTGGGTGGTTAAACCCACTAAGGTCTCGCTGTATGGATGTGCCCGGTCACACCAAAAAATCTCAAGAAA
ACTCACATTAAAGGACAGTA

Downstream 100 bases:

>100_bases
GCATTTGCGCCTGGCGTCCATGGGGGAGGAGGACTCCACCCCAGGTAGGCGTTCCAAGGCGTATTCGCGCCAGGGCGCTG
ATGTCCGCCCCATGAAGGGT

Product: hypothetical protein

Products: ADP; phosphate; Mg-protoporphyrin IX; H+

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MASQQIRYPFSAVVGQDELRLALILTAISPRIGGVVIRGEKGTAKTTTVRAFAGLLGDAPLVNLPLGSTEDRVVGSLNME
TVLTTGRAEYQPGLLAQADGGVLYVDEVNLLADHLVDALLDAAASGRVSIERDGISHSSPANFVLVGTMNPEEGELRPQL
LDRFGLAVDVAASTNPEVRVEIIRRRLDFENAPEQFMAKWAEQDADTSNRILAAKDLLPGVELPDLILSQIAWLCARIEV
DGMRADLVITRTALAHAAWAGRTVVTEEDVEIAARLALPHRRRRNPFDAPEMEERKLQETLQEARDFFKDNEDKGPAAKI
TDEETGAEAFTDTDNPTEEDGLQGTAQAKAQTTGKVGTAGSGDPFRS

Sequences:

>Translated_367_residues
MASQQIRYPFSAVVGQDELRLALILTAISPRIGGVVIRGEKGTAKTTTVRAFAGLLGDAPLVNLPLGSTEDRVVGSLNME
TVLTTGRAEYQPGLLAQADGGVLYVDEVNLLADHLVDALLDAAASGRVSIERDGISHSSPANFVLVGTMNPEEGELRPQL
LDRFGLAVDVAASTNPEVRVEIIRRRLDFENAPEQFMAKWAEQDADTSNRILAAKDLLPGVELPDLILSQIAWLCARIEV
DGMRADLVITRTALAHAAWAGRTVVTEEDVEIAARLALPHRRRRNPFDAPEMEERKLQETLQEARDFFKDNEDKGPAAKI
TDEETGAEAFTDTDNPTEEDGLQGTAQAKAQTTGKVGTAGSGDPFRS
>Mature_366_residues
ASQQIRYPFSAVVGQDELRLALILTAISPRIGGVVIRGEKGTAKTTTVRAFAGLLGDAPLVNLPLGSTEDRVVGSLNMET
VLTTGRAEYQPGLLAQADGGVLYVDEVNLLADHLVDALLDAAASGRVSIERDGISHSSPANFVLVGTMNPEEGELRPQLL
DRFGLAVDVAASTNPEVRVEIIRRRLDFENAPEQFMAKWAEQDADTSNRILAAKDLLPGVELPDLILSQIAWLCARIEVD
GMRADLVITRTALAHAAWAGRTVVTEEDVEIAARLALPHRRRRNPFDAPEMEERKLQETLQEARDFFKDNEDKGPAAKIT
DEETGAEAFTDTDNPTEEDGLQGTAQAKAQTTGKVGTAGSGDPFRS

Specific function: Unknown

COG id: COG1239

COG function: function code H; Mg-chelatase subunit ChlI

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 VWFA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011704
- InterPro:   IPR012804
- InterPro:   IPR002035 [H]

Pfam domain/function: PF07728 AAA_5; PF00092 VWA [H]

EC number: 6.6.1.1

Molecular weight: Translated: 39632; Mature: 39501

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASQQIRYPFSAVVGQDELRLALILTAISPRIGGVVIRGEKGTAKTTTVRAFAGLLGDAP
CCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC
LVNLPLGSTEDRVVGSLNMETVLTTGRAEYQPGLLAQADGGVLYVDEVNLLADHLVDALL
EEECCCCCCCCCEEECCCHHEEEECCCCCCCCCEEEECCCCEEEEECHHHHHHHHHHHHH
DAAASGRVSIERDGISHSSPANFVLVGTMNPEEGELRPQLLDRFGLAVDVAASTNPEVRV
HHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCEEEEECCCCCHHHH
EIIRRRLDFENAPEQFMAKWAEQDADTSNRILAAKDLLPGVELPDLILSQIAWLCARIEV
HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEHHHCCCCCCCHHHHHHHHHHHHHHEEE
DGMRADLVITRTALAHAAWAGRTVVTEEDVEIAARLALPHRRRRNPFDAPEMEERKLQET
CCCEEEEEEEHHHHHHHHHCCCEEEECCHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHH
LQEARDFFKDNEDKGPAAKITDEETGAEAFTDTDNPTEEDGLQGTAQAKAQTTGKVGTAG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHCCCCCCCCC
SGDPFRS
CCCCCCC
>Mature Secondary Structure 
ASQQIRYPFSAVVGQDELRLALILTAISPRIGGVVIRGEKGTAKTTTVRAFAGLLGDAP
CCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC
LVNLPLGSTEDRVVGSLNMETVLTTGRAEYQPGLLAQADGGVLYVDEVNLLADHLVDALL
EEECCCCCCCCCEEECCCHHEEEECCCCCCCCCEEEECCCCEEEEECHHHHHHHHHHHHH
DAAASGRVSIERDGISHSSPANFVLVGTMNPEEGELRPQLLDRFGLAVDVAASTNPEVRV
HHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCEEEEECCCCCHHHH
EIIRRRLDFENAPEQFMAKWAEQDADTSNRILAAKDLLPGVELPDLILSQIAWLCARIEV
HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEHHHCCCCCCCHHHHHHHHHHHHHHEEE
DGMRADLVITRTALAHAAWAGRTVVTEEDVEIAARLALPHRRRRNPFDAPEMEERKLQET
CCCEEEEEEEHHHHHHHHHCCCEEEECCHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHH
LQEARDFFKDNEDKGPAAKITDEETGAEAFTDTDNPTEEDGLQGTAQAKAQTTGKVGTAG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHCCCCCCCCC
SGDPFRS
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; protoporphyrin IX; Mg2+; H2O

Specific reaction: ATP + protoporphyrin IX + Mg2+ + H2O = ADP + phosphate + Mg-protoporphyrin IX + 2 H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]