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The map label for this gene is tnpR [H]

Identifier: 145294584

GI number: 145294584

Start: 594029

End: 594808

Strand: Direct

Name: tnpR [H]

Synonym: cgR_0535

Alternate gene names: 145294584

Gene position: 594029-594808 (Clockwise)

Preceding gene: 145294583

Following gene: 145294588

Centisome position: 17.92

GC content: 49.36

Gene sequence:

>780_bases
GTGCAGCGTGTCTATAAAAACGTCATCAAGGCCAGCGTCTATGAAGGCAATGGGCAATGGGGTCGTATTGATGATTTCCA
CCCGGAGCAGGTTCTTTTTGATGCAGGTGAAGCGTGGCCAAAATCTAAGACTGATCAGCTCCTCAACGACACTGATGTAG
TGCCGGTACTAGAGGACACTCCTACACCGACTCCAAAAACCACCGACTTGGGTCAGCGTGTGGGCTATGTTCGTGTCTCT
AGTACGGATCAAAATCTCGCTCGCCAGCGCGAAGCGATCGGTGCAGTCGACCGAGAGTTTGTTGATGAGCTTTCTGCCAG
ATCGCGTGCACAACGACCAAGCCTAGAAGAATGTATTGCCTATTTACGTAACCATGATGAATTAGTCGTGGCCTCGATTG
ATCGTCTGGCCAGGTCATTAGTGGATCTAAGATCCATTATTGATCAGATCACCGCAAAAGGCGCATCCGTGAGCTTTATT
AAAGAAGGGCTGGTGTTTTCTGCCACGGACCAGGATCCACGAGCAACTCTTATGCTCGGCATCTTAGGGTCATTTGCGGA
ATTTGAACGCTCAATTATTCGTGAACGGCAAGCAGAGGGGATTGCGTTAGCGAAAAAGGCCGGTAAGTATTCTGGCCGCA
AGAAAGCACTCTCACCCGCACAGATAAAACAGGCTCGCGATCGGATCGATGCAGGAGAATCGAAAACCGCTATTGCACAA
GACCTTGGAGTGGGTAGAGCAACGTTGTATCGGTATCTTATGACCGACAACAAAAGATAA

Upstream 100 bases:

>100_bases
TGTGCTCGATGATGGGGGAGAGCTGTGGGAAAAATATCAACGCACACCTAATTCAGCGACGTTTGTATCTTTTAGTGGCG
AGCCGCAAGGTCACCTTCAT

Downstream 100 bases:

>100_bases
GACGGCAATTCAGTATGTAACCAGTCCAGAGCTTCCATTGCTTCTGTTGTAAGACAGAAGCAATGGAAGCTCTGGACTGA
GATGCGCTTTAGAGATGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPVLEDTPTPTPKTTDLGQRVGYVRVS
STDQNLARQREAIGAVDREFVDELSARSRAQRPSLEECIAYLRNHDELVVASIDRLARSLVDLRSIIDQITAKGASVSFI
KEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKYSGRKKALSPAQIKQARDRIDAGESKTAIAQ
DLGVGRATLYRYLMTDNKR

Sequences:

>Translated_259_residues
MQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPVLEDTPTPTPKTTDLGQRVGYVRVS
STDQNLARQREAIGAVDREFVDELSARSRAQRPSLEECIAYLRNHDELVVASIDRLARSLVDLRSIIDQITAKGASVSFI
KEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKYSGRKKALSPAQIKQARDRIDAGESKTAIAQ
DLGVGRATLYRYLMTDNKR
>Mature_259_residues
MQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPVLEDTPTPTPKTTDLGQRVGYVRVS
STDQNLARQREAIGAVDREFVDELSARSRAQRPSLEECIAYLRNHDELVVASIDRLARSLVDLRSIIDQITAKGASVSFI
KEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKYSGRKKALSPAQIKQARDRIDAGESKTAIAQ
DLGVGRATLYRYLMTDNKR

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=187, Percent_Identity=33.6898395721925, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787827, Length=189, Percent_Identity=30.6878306878307, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787638, Length=183, Percent_Identity=31.1475409836066, Blast_Score=88, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 28797; Mature: 28797

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPVLEDT
CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHCCCCCCEEECCC
PTPTPKTTDLGQRVGYVRVSSTDQNLARQREAIGAVDREFVDELSARSRAQRPSLEECIA
CCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
YLRNHDELVVASIDRLARSLVDLRSIIDQITAKGASVSFIKEGLVFSATDQDPRATLMLG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCHHHHHHH
ILGSFAEFERSIIRERQAEGIALAKKAGKYSGRKKALSPAQIKQARDRIDAGESKTAIAQ
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHH
DLGVGRATLYRYLMTDNKR
HHCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPVLEDT
CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHCCCCCCEEECCC
PTPTPKTTDLGQRVGYVRVSSTDQNLARQREAIGAVDREFVDELSARSRAQRPSLEECIA
CCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
YLRNHDELVVASIDRLARSLVDLRSIIDQITAKGASVSFIKEGLVFSATDQDPRATLMLG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCHHHHHHH
ILGSFAEFERSIIRERQAEGIALAKKAGKYSGRKKALSPAQIKQARDRIDAGESKTAIAQ
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHH
DLGVGRATLYRYLMTDNKR
HHCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2992807; 6312271; 3029727 [H]