Click here to switch to the map view.

The map label for this gene is ccsA [H]

Identifier: 145294561

GI number: 145294561

Start: 572923

End: 573936

Strand: Direct

Name: ccsA [H]

Synonym: cgR_0512

Alternate gene names: 145294561

Gene position: 572923-573936 (Clockwise)

Preceding gene: 145294560

Following gene: 145294562

Centisome position: 17.29

GC content: 55.42

Gene sequence:

>1014_bases
ATGTTGCCCGTCAACCAAACGTATGCGCAGTTCTCAGACACTGCCTTCGTATCGGCATACATCATCTACGTTCTGGCACT
CATCCTCTCCCTCGTCTACTACGTTAAACAACAAGGCATTATCGACGCCCGCCGCGAGCAAACCCGCGTCAGCGAACTCG
TTGGTGCAGGCGGCAGCGCTGATGTTGATACTGACCTGCCTGATGACATCGCCGACGGTGTCCTCGCAGACGAAGACCTT
GCAAAACGCGAAGAAACTGCACGCAAACTAGCCAACATGACCCAATCTCTCATGTGGCTCGGCGTCATGGCGCACCTCGT
TTCCGTCGTGATGCGCGCGCTGTCTGCCAGCCGATTCCCCTTCGGCAACCTGTATGAATACATCCTCATGGTGACCCTCT
TTGCCATGATCGGAGCCGTACTCATCCTGCAGCGCCCACAATTCCGCGTGGTATGGCCATGGATCCTCACCCCAATGCTG
GCACTGCTCTTCTACGGTGGCACCCAGCTGTACTCCGACGCAGCACCAGTCGTTCCAGCACTGCAGTCCTTCTGGTTCCC
GATCCACGTTTCCTCCGTCTCCATCGGCGCATCCATCGGTATCGTCTCCGGTATTGCATCTCTGCTGTACCTACTGCGCA
TGTGGCAACCAAAGGGTAAAGAAAAGGGCTTCTTCGGCGCAGTAGCAAAACCACTCCCATCCGGAAAAACCCTGGATAAC
CTGGCATACAAGACCGCGATCTGGACTGTCCCAATCTTCGGCCTGGGCATCATCTTGGGTGCCATCTGGGCAGAAGCAGC
CTGGGGTCGTTTCTGGGGATGGGATCCTAAGGAAACAGTCTCCTTCATCACCTGGGTTCTCTACGCTGGTTACCTCCACG
CACGTGCAACTGCTGGTTGGCGCAACACCAACGCTGCATGGATCAACATCCTGGCGCTGGTCACGATGATTTTTAATCTG
TTCTTCATCAACATGGTCGTATCTGGTCTGCACTCTTACGCCGGACTGAACTAA

Upstream 100 bases:

>100_bases
AGGAAGATGAAGACGAAGAGTACTTCGACCACGACGACTAACACCGCAGTTTAAAGACCCTACATCGAAGCAATTCTCAC
AAGAATAAGGTTGGAAAATT

Downstream 100 bases:

>100_bases
GCACTTTTGGTTGGCGCGGTTAGTGAGACCCGCCCTCGTTCTTCATTGAGCGAGGGCGGGTTTGTTGTTATTTAGAGAGC
ATTGCGTACTTTCGACAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSADVDTDLPDDIADGVLADEDL
AKREETARKLANMTQSLMWLGVMAHLVSVVMRALSASRFPFGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPML
ALLFYGGTQLYSDAAPVVPALQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGWRNTNAAWINILALVTMIFNL
FFINMVVSGLHSYAGLN

Sequences:

>Translated_337_residues
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSADVDTDLPDDIADGVLADEDL
AKREETARKLANMTQSLMWLGVMAHLVSVVMRALSASRFPFGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPML
ALLFYGGTQLYSDAAPVVPALQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGWRNTNAAWINILALVTMIFNL
FFINMVVSGLHSYAGLN
>Mature_337_residues
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSADVDTDLPDDIADGVLADEDL
AKREETARKLANMTQSLMWLGVMAHLVSVVMRALSASRFPFGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPML
ALLFYGGTQLYSDAAPVVPALQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGWRNTNAAWINILALVTMIFNL
FFINMVVSGLHSYAGLN

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 37244; Mature: 37244

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
DVDTDLPDDIADGVLADEDLAKREETARKLANMTQSLMWLGVMAHLVSVVMRALSASRFP
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPMLALLFYGGTQLYSDAAPVVPA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCHHHHCCCCHHHHH
LQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
HHHHCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHH
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RNTNAAWINILALVTMIFNLFFINMVVSGLHSYAGLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
DVDTDLPDDIADGVLADEDLAKREETARKLANMTQSLMWLGVMAHLVSVVMRALSASRFP
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPMLALLFYGGTQLYSDAAPVVPA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCHHHHCCCCHHHHH
LQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
HHHHCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHH
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RNTNAAWINILALVTMIFNLFFINMVVSGLHSYAGLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA