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The map label for this gene is ydeE [H]

Identifier: 145294459

GI number: 145294459

Start: 452116

End: 452964

Strand: Direct

Name: ydeE [H]

Synonym: cgR_0414

Alternate gene names: 145294459

Gene position: 452116-452964 (Clockwise)

Preceding gene: 145294457

Following gene: 145294464

Centisome position: 13.64

GC content: 51.12

Gene sequence:

>849_bases
ATGTTGGAACTGAATCGGATTATTCAAGAGATTGAGGATGATCTGGAAGTGGACGTCGATAAGCTGGCGCGTCGTGCGCT
GACCACCGAGTATCATCTGCGAAAAATGTTTGGCACCCTGGCCGGGATGTCGCTTGCGGAGTACATCCGCAATCGGCGCC
TGACGCTGGCGGCGGCGGATTTAAAAGCCGGGCAGGCGGTGCTCGACGTCGCGGTTAAGTACGGCTATGCCTCTTCCGAG
GCCTTTGCGCGCGCTTTTCGACGTTTCCATGCGGTCAATCCTTCCCAGGCCCGTTCAGATTCCATCATGCTCAGTTCTCA
GCCACGGCTGAGATTTCATATTCATGTTAAAGGAGTGACAGATTTGCGATACCGCATTATAGAAAAACAAGCCTTTTATC
TCACAGGATTTCATACCCAAGTGCAGTTGGTATTTAAGGGAGATAACCAGGGCATTGTTGATTTTGAGAAGTCTTTAGGC
AAGGAAGCCAAAGCTCGGTTGCTATCTCTTAATGACATTGAGCCCAAAGGCGCGCTTTCAATTAGCGATGAGATAGAAAA
TCAACAGGCAGAAGGATCAACGCTGGATTATTGGCATGCAGTGGCCACGAGTAACCCTGTGGAAGAATTCGAATCCATGG
AGGTTCCAGCTGGAACCTGGGTGATGTTTGAATCCGAGGGAGCGTTCCCGGAAAGCATCCAGCAAATGTGGGCGGATGCA
GCTACGGAATGGTTCCCTGCGAACTCATATTCATGGGCTCCGGGGCCGCAGCTGCTGCACACGGAATACTCAGAAGATTT
CTCCACCGCATCGGCGCAATTATGGTTGCCGATTACGCGGAATAGTTAA

Upstream 100 bases:

>100_bases
GAAGTGCTTTTACTGGGATACTCACCCGCGCCATGGTACCGATTTTTTACGGTCAGAAAAGATCAAGAAGCAAAACATCA
ACGAAATTAGGGTTGTACAT

Downstream 100 bases:

>100_bases
TTCCTATACAGCCCGCAGGAGGTAGTTTCCGTAGCCTGATTTCTTGAGTTCCTCACCAAGCGCGGTGAGTTCCGAAGCTG
TGATGAAACCCTCGCGGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MLELNRIIQEIEDDLEVDVDKLARRALTTEYHLRKMFGTLAGMSLAEYIRNRRLTLAAADLKAGQAVLDVAVKYGYASSE
AFARAFRRFHAVNPSQARSDSIMLSSQPRLRFHIHVKGVTDLRYRIIEKQAFYLTGFHTQVQLVFKGDNQGIVDFEKSLG
KEAKARLLSLNDIEPKGALSISDEIENQQAEGSTLDYWHAVATSNPVEEFESMEVPAGTWVMFESEGAFPESIQQMWADA
ATEWFPANSYSWAPGPQLLHTEYSEDFSTASAQLWLPITRNS

Sequences:

>Translated_282_residues
MLELNRIIQEIEDDLEVDVDKLARRALTTEYHLRKMFGTLAGMSLAEYIRNRRLTLAAADLKAGQAVLDVAVKYGYASSE
AFARAFRRFHAVNPSQARSDSIMLSSQPRLRFHIHVKGVTDLRYRIIEKQAFYLTGFHTQVQLVFKGDNQGIVDFEKSLG
KEAKARLLSLNDIEPKGALSISDEIENQQAEGSTLDYWHAVATSNPVEEFESMEVPAGTWVMFESEGAFPESIQQMWADA
ATEWFPANSYSWAPGPQLLHTEYSEDFSTASAQLWLPITRNS
>Mature_282_residues
MLELNRIIQEIEDDLEVDVDKLARRALTTEYHLRKMFGTLAGMSLAEYIRNRRLTLAAADLKAGQAVLDVAVKYGYASSE
AFARAFRRFHAVNPSQARSDSIMLSSQPRLRFHIHVKGVTDLRYRIIEKQAFYLTGFHTQVQLVFKGDNQGIVDFEKSLG
KEAKARLLSLNDIEPKGALSISDEIENQQAEGSTLDYWHAVATSNPVEEFESMEVPAGTWVMFESEGAFPESIQQMWADA
ATEWFPANSYSWAPGPQLLHTEYSEDFSTASAQLWLPITRNS

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=100, Percent_Identity=33, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790497, Length=86, Percent_Identity=36.046511627907, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31843; Mature: 31843

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELNRIIQEIEDDLEVDVDKLARRALTTEYHLRKMFGTLAGMSLAEYIRNRRLTLAAAD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
LKAGQAVLDVAVKYGYASSEAFARAFRRFHAVNPSQARSDSIMLSSQPRLRFHIHVKGVT
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEEECCH
DLRYRIIEKQAFYLTGFHTQVQLVFKGDNQGIVDFEKSLGKEAKARLLSLNDIEPKGALS
HHHHHHHHHHEEEEEEECEEEEEEEECCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCEE
ISDEIENQQAEGSTLDYWHAVATSNPVEEFESMEVPAGTWVMFESEGAFPESIQQMWADA
EHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH
ATEWFPANSYSWAPGPQLLHTEYSEDFSTASAQLWLPITRNS
HHHCCCCCCCCCCCCCCHHHCCHHCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MLELNRIIQEIEDDLEVDVDKLARRALTTEYHLRKMFGTLAGMSLAEYIRNRRLTLAAAD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
LKAGQAVLDVAVKYGYASSEAFARAFRRFHAVNPSQARSDSIMLSSQPRLRFHIHVKGVT
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEEECCH
DLRYRIIEKQAFYLTGFHTQVQLVFKGDNQGIVDFEKSLGKEAKARLLSLNDIEPKGALS
HHHHHHHHHHEEEEEEECEEEEEEEECCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCEE
ISDEIENQQAEGSTLDYWHAVATSNPVEEFESMEVPAGTWVMFESEGAFPESIQQMWADA
EHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH
ATEWFPANSYSWAPGPQLLHTEYSEDFSTASAQLWLPITRNS
HHHCCCCCCCCCCCCCCHHHCCHHCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]