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The map label for this gene is yurN [H]

Identifier: 138896876

GI number: 138896876

Start: 3356777

End: 3357877

Strand: Reverse

Name: yurN [H]

Synonym: GTNG_3243

Alternate gene names: 138896876

Gene position: 3357877-3356777 (Counterclockwise)

Preceding gene: 138896877

Following gene: 138896875

Centisome position: 94.58

GC content: 39.42

Gene sequence:

>1101_bases
ATGAAGATAAACAAGAAAACAACCATGGGGATATGGCTTGGAATCCTTCCCGCTCTATTGATATACACCGTTTTTGCCAT
TCTACCTATTTTGCAATCGTTTTATTATTCCCTCATGAAGTGGAACGGGATATCAGAGATGACCTTTGTGGGGCTGGATA
ACTTTGTGGAATTGTTAAAGGACCCTGATTTTTGGAATTCGGTCAAAAATAATATATTGGTCGTACTTGCGTCTGTGTTC
GGTCAAGTGCCGATCGCGTTATTGATCGCCATCCTACTGAATAGAAAGCTAAAGGGGTCTAGACTATTTCGAACGATTGG
CTTTTTACCAGTCGTATTATCGACCGTTGTGATCTCGATCACTTGGAATTTAGTTTATAATTCTAAATACGGATTAATCA
ATGAGTTTCTCAGAAGTATAGGGTTAGACTTCTTAACGCAAAACTGGTTGGGCGACCCGGACTTAGCATTGTATTCCGTG
CTTGTGGTCATTGTATGGCAGTTTGTTGGGTTATATTTAATTATTTTTCTCGCCGCATTACAAAATATCCCGAACGAGGT
GTTAGAATCAGCGAAAATTGATGGGGCTTCGGAATGGGTGACCACATGGAAAATCACTATCCCGATGATTTGGGATACCA
TCCTAGTGGCGATCGTTTTATGCATCTCAGGAAGCCTAAAAACGTTCGATCTGATTCTACAAAAGATGTTTGAAGAAGAT
CTAGTCACTATTATCGAGAAGTTAGGTTTGGATCATGAAGAAACCAATGATTGGCTAATTGAAAGAGCCTTGGAATACAT
TCGTCAGTTTTATCGAGAACCGATCAAAGCGAGTGAAGTCGCTAATGTAGTCAATATTTCAGCCAATTATTTCAGTACGA
TATTTAGGCAAAAAACCGGGAAAACATTTAACGAGTATGTCAACCTTCTAAGAGTTAACGAAGCGAGGAAACTGCTTTCT
GAAACTTCTCTTCGAGTGGGTGTGATCGCTAACAATGTCGGTTTCCATGAGTATAAGTATTTCGTCGAGGTATTTAAGAA
ATTTACAGGCATGACTCCAACAGAATATCGAAATTTGTACAATAGAGAGCTAGGAGGATAA

Upstream 100 bases:

>100_bases
GGATTGCCGAACATGAGGTTGATTAAGCCGCTATGAATCTACATTTGGGGAGTGTCCCGAGTCACTCGGGACACGAATCT
CTATTCAAAGGTGAGCTGTG

Downstream 100 bases:

>100_bases
GGCATGGAGAAAATTGGTATGCAATTGCCGAATCATTTTATCATTGGTGCCGCGTCATCTGCTTGGCAAACGGAAGGGTG
GTCTGGTAAAAAAGACTTTC

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MKINKKTTMGIWLGILPALLIYTVFAILPILQSFYYSLMKWNGISEMTFVGLDNFVELLKDPDFWNSVKNNILVVLASVF
GQVPIALLIAILLNRKLKGSRLFRTIGFLPVVLSTVVISITWNLVYNSKYGLINEFLRSIGLDFLTQNWLGDPDLALYSV
LVVIVWQFVGLYLIIFLAALQNIPNEVLESAKIDGASEWVTTWKITIPMIWDTILVAIVLCISGSLKTFDLILQKMFEED
LVTIIEKLGLDHEETNDWLIERALEYIRQFYREPIKASEVANVVNISANYFSTIFRQKTGKTFNEYVNLLRVNEARKLLS
ETSLRVGVIANNVGFHEYKYFVEVFKKFTGMTPTEYRNLYNRELGG

Sequences:

>Translated_366_residues
MKINKKTTMGIWLGILPALLIYTVFAILPILQSFYYSLMKWNGISEMTFVGLDNFVELLKDPDFWNSVKNNILVVLASVF
GQVPIALLIAILLNRKLKGSRLFRTIGFLPVVLSTVVISITWNLVYNSKYGLINEFLRSIGLDFLTQNWLGDPDLALYSV
LVVIVWQFVGLYLIIFLAALQNIPNEVLESAKIDGASEWVTTWKITIPMIWDTILVAIVLCISGSLKTFDLILQKMFEED
LVTIIEKLGLDHEETNDWLIERALEYIRQFYREPIKASEVANVVNISANYFSTIFRQKTGKTFNEYVNLLRVNEARKLLS
ETSLRVGVIANNVGFHEYKYFVEVFKKFTGMTPTEYRNLYNRELGG
>Mature_366_residues
MKINKKTTMGIWLGILPALLIYTVFAILPILQSFYYSLMKWNGISEMTFVGLDNFVELLKDPDFWNSVKNNILVVLASVF
GQVPIALLIAILLNRKLKGSRLFRTIGFLPVVLSTVVISITWNLVYNSKYGLINEFLRSIGLDFLTQNWLGDPDLALYSV
LVVIVWQFVGLYLIIFLAALQNIPNEVLESAKIDGASEWVTTWKITIPMIWDTILVAIVLCISGSLKTFDLILQKMFEED
LVTIIEKLGLDHEETNDWLIERALEYIRQFYREPIKASEVANVVNISANYFSTIFRQKTGKTFNEYVNLLRVNEARKLLS
ETSLRVGVIANNVGFHEYKYFVEVFKKFTGMTPTEYRNLYNRELGG

Specific function: Probably part of the binding-protein-dependent transport system yurMNO. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=205, Percent_Identity=32.6829268292683, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787570, Length=180, Percent_Identity=28.3333333333333, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790391, Length=107, Percent_Identity=39.2523364485981, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789993, Length=118, Percent_Identity=31.3559322033898, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788725, Length=106, Percent_Identity=31.1320754716981, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786251, Length=202, Percent_Identity=24.2574257425743, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI171474011, Length=105, Percent_Identity=29.5238095238095, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790559, Length=100, Percent_Identity=33, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 41972; Mature: 41972

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINKKTTMGIWLGILPALLIYTVFAILPILQSFYYSLMKWNGISEMTFVGLDNFVELLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
DPDFWNSVKNNILVVLASVFGQVPIALLIAILLNRKLKGSRLFRTIGFLPVVLSTVVISI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
TWNLVYNSKYGLINEFLRSIGLDFLTQNWLGDPDLALYSVLVVIVWQFVGLYLIIFLAAL
HHHHHCCCCHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNIPNEVLESAKIDGASEWVTTWKITIPMIWDTILVAIVLCISGSLKTFDLILQKMFEED
HHCCHHHHHHHCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LVTIIEKLGLDHEETNDWLIERALEYIRQFYREPIKASEVANVVNISANYFSTIFRQKTG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
KTFNEYVNLLRVNEARKLLSETSLRVGVIANNVGFHEYKYFVEVFKKFTGMTPTEYRNLY
CHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
NRELGG
HHCCCC
>Mature Secondary Structure
MKINKKTTMGIWLGILPALLIYTVFAILPILQSFYYSLMKWNGISEMTFVGLDNFVELLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
DPDFWNSVKNNILVVLASVFGQVPIALLIAILLNRKLKGSRLFRTIGFLPVVLSTVVISI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
TWNLVYNSKYGLINEFLRSIGLDFLTQNWLGDPDLALYSVLVVIVWQFVGLYLIIFLAAL
HHHHHCCCCHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNIPNEVLESAKIDGASEWVTTWKITIPMIWDTILVAIVLCISGSLKTFDLILQKMFEED
HHCCHHHHHHHCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LVTIIEKLGLDHEETNDWLIERALEYIRQFYREPIKASEVANVVNISANYFSTIFRQKTG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
KTFNEYVNLLRVNEARKLLSETSLRVGVIANNVGFHEYKYFVEVFKKFTGMTPTEYRNLY
CHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
NRELGG
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]