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The map label for this gene is rbsR [H]

Identifier: 138896812

GI number: 138896812

Start: 3277031

End: 3278020

Strand: Reverse

Name: rbsR [H]

Synonym: GTNG_3175

Alternate gene names: 138896812

Gene position: 3278020-3277031 (Counterclockwise)

Preceding gene: 138896813

Following gene: 138896811

Centisome position: 92.33

GC content: 46.36

Gene sequence:

>990_bases
ATGGCAACGATTCGTGATGTAGCAAAGCGTGCAGGCGTCTCTGTCGCCACCGTGTCACGCGTGTTAAATCAAAATGGGTA
CGTGAATGAGGAAACGGAGAAACGCGTCAGACGGGCGATGAAGGAGCTGAACTATAAGCCGAGTGAAGTGGCGAGGGCGT
TGTTTAAAAAAACCTCAAAAACGGTTGGGCTCATTGTCCCTGATATTACGAACCCATTTTTCCCGGAACTTGTTCGCGCT
GTAGAAGATGTGATGAATATTTATGACTATACGGTTATTCTATGCAATTCCGATGAGAAAGCCGAAAAAGAACGGGAATA
CATCGAGGTGTTAAAGCAAAAATATGTGGACGGTGTCATTTTGACAACTAATCAATTGACGCCGGATGAAGTGGATGAAT
GGGATGTTCCCATTGTTGTGCTAGATCGTCCATTCAATGAGAAGTATCCGTCCGTGGTTGTTGATAACTATCGAGGGGCT
CGTTTAGCGACTAGACATTTATATGATATGGGGTGTCGACGCATCGCCCATATTCAAGGGCCTATGTATGTGGTGAACGC
CGTTGAACGTTTTCGTGGTTATCAAGATGAAATGATGGAGTTAGGGATTTGGGAGCAGCGGTTGGTGATTCAGGGGAACT
ACCAGCTCAAGCAGGCAAAAGAAGCAGTGATGGCGGCTTTGGCCCAACAGGAGATCGACGGAATTTTTGCCGGCAATGAC
GCGATGGCAGTGGGTGCTTTGAAAGCGGTTCAACAATGTGGGTTGCGGGTTCCCGATGATATTGCGATTATTGGTTACGA
TGGCATCCCGCTGACGGAAATGACAACCCCTGAGCTCTCAACTGTATCTCAGCCTATTTACGATATGGGGGCAATCGCAG
CAAGAATTTTAATCAAACAAATCGAAGGAAAACCACTAGAAAAACTTCATTACCAACTTCCGGTTCAATTGATTGTACGG
CAATCCACGTCAAGGAGGGAACAAATGTGA

Upstream 100 bases:

>100_bases
TTCAAAAGTATTCTCGGGATAAGAAAATGCTTGATGGCTTAGTCAAAATCATGTATACTTTGTGTAACCGGTTACACAAA
GTGAAAAGAAGGAATTAACA

Downstream 100 bases:

>100_bases
ACAAGCCTATCATTACTGTGATCGGCAGTATCAATATGGACTTAGTAACTGTGGCTGCCCGCTTTCCGAATCAGGGGGAG
ACGATTTTAGGTAAACAGTT

Product: transcriptional repressor of the ribose operon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MATIRDVAKRAGVSVATVSRVLNQNGYVNEETEKRVRRAMKELNYKPSEVARALFKKTSKTVGLIVPDITNPFFPELVRA
VEDVMNIYDYTVILCNSDEKAEKEREYIEVLKQKYVDGVILTTNQLTPDEVDEWDVPIVVLDRPFNEKYPSVVVDNYRGA
RLATRHLYDMGCRRIAHIQGPMYVVNAVERFRGYQDEMMELGIWEQRLVIQGNYQLKQAKEAVMAALAQQEIDGIFAGND
AMAVGALKAVQQCGLRVPDDIAIIGYDGIPLTEMTTPELSTVSQPIYDMGAIAARILIKQIEGKPLEKLHYQLPVQLIVR
QSTSRREQM

Sequences:

>Translated_329_residues
MATIRDVAKRAGVSVATVSRVLNQNGYVNEETEKRVRRAMKELNYKPSEVARALFKKTSKTVGLIVPDITNPFFPELVRA
VEDVMNIYDYTVILCNSDEKAEKEREYIEVLKQKYVDGVILTTNQLTPDEVDEWDVPIVVLDRPFNEKYPSVVVDNYRGA
RLATRHLYDMGCRRIAHIQGPMYVVNAVERFRGYQDEMMELGIWEQRLVIQGNYQLKQAKEAVMAALAQQEIDGIFAGND
AMAVGALKAVQQCGLRVPDDIAIIGYDGIPLTEMTTPELSTVSQPIYDMGAIAARILIKQIEGKPLEKLHYQLPVQLIVR
QSTSRREQM
>Mature_328_residues
ATIRDVAKRAGVSVATVSRVLNQNGYVNEETEKRVRRAMKELNYKPSEVARALFKKTSKTVGLIVPDITNPFFPELVRAV
EDVMNIYDYTVILCNSDEKAEKEREYIEVLKQKYVDGVILTTNQLTPDEVDEWDVPIVVLDRPFNEKYPSVVVDNYRGAR
LATRHLYDMGCRRIAHIQGPMYVVNAVERFRGYQDEMMELGIWEQRLVIQGNYQLKQAKEAVMAALAQQEIDGIFAGNDA
MAVGALKAVQQCGLRVPDDIAIIGYDGIPLTEMTTPELSTVSQPIYDMGAIAARILIKQIEGKPLEKLHYQLPVQLIVRQ
STSRREQM

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=329, Percent_Identity=37.3860182370821, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1788474, Length=337, Percent_Identity=35.0148367952522, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787948, Length=333, Percent_Identity=35.7357357357357, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1790369, Length=328, Percent_Identity=32.6219512195122, Blast_Score=188, Evalue=5e-49,
Organism=Escherichia coli, GI1789202, Length=333, Percent_Identity=33.3333333333333, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1789068, Length=298, Percent_Identity=34.2281879194631, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI48994940, Length=306, Percent_Identity=30.718954248366, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1787580, Length=316, Percent_Identity=28.7974683544304, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1790715, Length=314, Percent_Identity=28.0254777070064, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1786540, Length=329, Percent_Identity=28.8753799392097, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787906, Length=333, Percent_Identity=28.8288288288288, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1790689, Length=303, Percent_Identity=27.3927392739274, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786268, Length=302, Percent_Identity=23.5099337748344, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790192, Length=288, Percent_Identity=24.6527777777778, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37284; Mature: 37152

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIRDVAKRAGVSVATVSRVLNQNGYVNEETEKRVRRAMKELNYKPSEVARALFKKTSK
CCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
TVGLIVPDITNPFFPELVRAVEDVMNIYDYTVILCNSDEKAEKEREYIEVLKQKYVDGVI
CEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHCCEE
LTTNQLTPDEVDEWDVPIVVLDRPFNEKYPSVVVDNYRGARLATRHLYDMGCRRIAHIQG
EEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC
PMYVVNAVERFRGYQDEMMELGIWEQRLVIQGNYQLKQAKEAVMAALAQQEIDGIFAGND
CHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEECCC
AMAVGALKAVQQCGLRVPDDIAIIGYDGIPLTEMTTPELSTVSQPIYDMGAIAARILIKQ
HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IEGKPLEKLHYQLPVQLIVRQSTSRREQM
HCCCCHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATIRDVAKRAGVSVATVSRVLNQNGYVNEETEKRVRRAMKELNYKPSEVARALFKKTSK
CCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
TVGLIVPDITNPFFPELVRAVEDVMNIYDYTVILCNSDEKAEKEREYIEVLKQKYVDGVI
CEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHCCEE
LTTNQLTPDEVDEWDVPIVVLDRPFNEKYPSVVVDNYRGARLATRHLYDMGCRRIAHIQG
EEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC
PMYVVNAVERFRGYQDEMMELGIWEQRLVIQGNYQLKQAKEAVMAALAQQEIDGIFAGND
CHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEECCC
AMAVGALKAVQQCGLRVPDDIAIIGYDGIPLTEMTTPELSTVSQPIYDMGAIAARILIKQ
HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IEGKPLEKLHYQLPVQLIVRQSTSRREQM
HCCCCHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]