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The map label for this gene is yvcD [H]

Identifier: 138896655

GI number: 138896655

Start: 3115097

End: 3116395

Strand: Reverse

Name: yvcD [H]

Synonym: GTNG_3018

Alternate gene names: 138896655

Gene position: 3116395-3115097 (Counterclockwise)

Preceding gene: 138896656

Following gene: 138896654

Centisome position: 87.78

GC content: 52.66

Gene sequence:

>1299_bases
TTGCAGCTTGCCCTTGTATTGTCCGAGCTTGGCGAATACCAAGTGTCCAATCAATGGTTACTCAAAATTATTCACGATTT
AGACGAAACGATGTACGATTGTCTATATTTTTTGGCGAACAATTACGCTTGTCTTGGCTTGTTTCGTGAAGCGACGCAAT
ATGCGGAACAGTATTTGACATGCGAATCAGACGGGGAGTTCGCTGATGATGCCGCCGATTTGTTGGAGCTGCTTAAACTC
GACCGCCACGATGTAAGCGAAGAGCAAGAGCAGCTGATCACCATGCAGGAGCGGGCCCGGCATTTGCTTGAGCAAGAGCG
GTTTGCGGAAGCGATTGAGGCGTTAGAAGCGATCGTTTCCCGGTATCCGGAATTTTGGTCGGCGCACAACAATTTGGCGC
TTGCTTATTTTTACAACGGTGACGTGGAAAGGGCGAAACAAAAGCTGCTTGAGGTGTTGAAGCGTGATCCCGGTAATTTG
CATGCACTTTGCAATGCGCTCGTTTTCGCCTATTATTTGCATGATCAAGAAGAGGTGGCTGCTCTTTGCGAGACGCTCGC
TTCGGTCTACCCGTTTTTCCGCGAACACCAATATAAGCTTGGCGCCACCTTTGCCCTTGTCGGGCGGTTCGACTCGGCGT
TTCGCTGGTTGTACCGCCTCTATAAGAACGGTTTTGACGGCGACGGGCCGTTTTACTACTGGCTTGCTTATTCCGCGTAT
CATATTGGACACGAATCGCTAGCCCGACAAGTGTGGGAAACGCTCACTACCCTTCACCCGGAAAAGCGCGGCGAGGAGCC
TTGGGCTGTTCCGGCGCTGTTCGATGAAACACTCCTCCGCATTGTTCACTTGTTTGAGGGAGAAGAGCTCGCTGACCGGC
TGTGCGGGTTGTATTTGTTCAGCCGTTCGCCGCAAGCGGAAGAGACCGCATTGTCGCTGGCTGTCTGCCGTCTTTTGCCG
GCCGACCCGAGCCTGCGCCCGTTTATTGATTCTTTTTTGTTCGGATTGGATGATGGGCGGTCCGCTTGGGCAGCGAATAT
CGGCCGCATGGTCGATGTGCTTTTGGCAAATAATGAGGAAAAGGAGGCGCTCTGCCGCTTCGCCTTCACAATGGCTGCCC
ACCCGTCAGCCCAGGGCGAACCGTTTGTGAACGGAGCTGCATGGGCGGCAGCGATCGAATATGTTTGGCGCCAGCAACAA
GGGGAACGTGTGACGCAAAAAACGATGGCGGCGAAATACGGCGTTTCTACGACGACTGTAAAAAAGTATGTACAAAAAGC
GCGCCAGTTGGATTCATGA

Upstream 100 bases:

>100_bases
TAAAAAAGGGATGAGAGCGTACGAGCGGGGCGATTTATATAAAGCAAGGAAATATTTTGAGCGCGCTGTCCGGCTTGATG
AGCGCGATGCATCGTTCGCC

Downstream 100 bases:

>100_bases
GCCACCATGGGGACGGCGAATGTGTGAGCAAATCAATAGACGTCATGCTGTGACTTTTATACGATGAAGATGGAGTGATT
TTTGAGCGAAGGAGTGGACG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MQLALVLSELGEYQVSNQWLLKIIHDLDETMYDCLYFLANNYACLGLFREATQYAEQYLTCESDGEFADDAADLLELLKL
DRHDVSEEQEQLITMQERARHLLEQERFAEAIEALEAIVSRYPEFWSAHNNLALAYFYNGDVERAKQKLLEVLKRDPGNL
HALCNALVFAYYLHDQEEVAALCETLASVYPFFREHQYKLGATFALVGRFDSAFRWLYRLYKNGFDGDGPFYYWLAYSAY
HIGHESLARQVWETLTTLHPEKRGEEPWAVPALFDETLLRIVHLFEGEELADRLCGLYLFSRSPQAEETALSLAVCRLLP
ADPSLRPFIDSFLFGLDDGRSAWAANIGRMVDVLLANNEEKEALCRFAFTMAAHPSAQGEPFVNGAAWAAAIEYVWRQQQ
GERVTQKTMAAKYGVSTTTVKKYVQKARQLDS

Sequences:

>Translated_432_residues
MQLALVLSELGEYQVSNQWLLKIIHDLDETMYDCLYFLANNYACLGLFREATQYAEQYLTCESDGEFADDAADLLELLKL
DRHDVSEEQEQLITMQERARHLLEQERFAEAIEALEAIVSRYPEFWSAHNNLALAYFYNGDVERAKQKLLEVLKRDPGNL
HALCNALVFAYYLHDQEEVAALCETLASVYPFFREHQYKLGATFALVGRFDSAFRWLYRLYKNGFDGDGPFYYWLAYSAY
HIGHESLARQVWETLTTLHPEKRGEEPWAVPALFDETLLRIVHLFEGEELADRLCGLYLFSRSPQAEETALSLAVCRLLP
ADPSLRPFIDSFLFGLDDGRSAWAANIGRMVDVLLANNEEKEALCRFAFTMAAHPSAQGEPFVNGAAWAAAIEYVWRQQQ
GERVTQKTMAAKYGVSTTTVKKYVQKARQLDS
>Mature_432_residues
MQLALVLSELGEYQVSNQWLLKIIHDLDETMYDCLYFLANNYACLGLFREATQYAEQYLTCESDGEFADDAADLLELLKL
DRHDVSEEQEQLITMQERARHLLEQERFAEAIEALEAIVSRYPEFWSAHNNLALAYFYNGDVERAKQKLLEVLKRDPGNL
HALCNALVFAYYLHDQEEVAALCETLASVYPFFREHQYKLGATFALVGRFDSAFRWLYRLYKNGFDGDGPFYYWLAYSAY
HIGHESLARQVWETLTTLHPEKRGEEPWAVPALFDETLLRIVHLFEGEELADRLCGLYLFSRSPQAEETALSLAVCRLLP
ADPSLRPFIDSFLFGLDDGRSAWAANIGRMVDVLLANNEEKEALCRFAFTMAAHPSAQGEPFVNGAAWAAAIEYVWRQQQ
GERVTQKTMAAKYGVSTTTVKKYVQKARQLDS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49494; Mature: 49494

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLALVLSELGEYQVSNQWLLKIIHDLDETMYDCLYFLANNYACLGLFREATQYAEQYLT
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
CESDGEFADDAADLLELLKLDRHDVSEEQEQLITMQERARHLLEQERFAEAIEALEAIVS
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYPEFWSAHNNLALAYFYNGDVERAKQKLLEVLKRDPGNLHALCNALVFAYYLHDQEEVA
HCHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHH
ALCETLASVYPFFREHQYKLGATFALVGRFDSAFRWLYRLYKNGFDGDGPFYYWLAYSAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHH
HIGHESLARQVWETLTTLHPEKRGEEPWAVPALFDETLLRIVHLFEGEELADRLCGLYLF
HCCHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SRSPQAEETALSLAVCRLLPADPSLRPFIDSFLFGLDDGRSAWAANIGRMVDVLLANNEE
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCH
KEALCRFAFTMAAHPSAQGEPFVNGAAWAAAIEYVWRQQQGERVTQKTMAAKYGVSTTTV
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KKYVQKARQLDS
HHHHHHHHCCCC
>Mature Secondary Structure
MQLALVLSELGEYQVSNQWLLKIIHDLDETMYDCLYFLANNYACLGLFREATQYAEQYLT
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
CESDGEFADDAADLLELLKLDRHDVSEEQEQLITMQERARHLLEQERFAEAIEALEAIVS
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYPEFWSAHNNLALAYFYNGDVERAKQKLLEVLKRDPGNLHALCNALVFAYYLHDQEEVA
HCHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHH
ALCETLASVYPFFREHQYKLGATFALVGRFDSAFRWLYRLYKNGFDGDGPFYYWLAYSAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHH
HIGHESLARQVWETLTTLHPEKRGEEPWAVPALFDETLLRIVHLFEGEELADRLCGLYLF
HCCHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SRSPQAEETALSLAVCRLLPADPSLRPFIDSFLFGLDDGRSAWAANIGRMVDVLLANNEE
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCH
KEALCRFAFTMAAHPSAQGEPFVNGAAWAAAIEYVWRQQQGERVTQKTMAAKYGVSTTTV
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KKYVQKARQLDS
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]