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The map label for this gene is pilC [H]

Identifier: 138896194

GI number: 138896194

Start: 2657109

End: 2658320

Strand: Reverse

Name: pilC [H]

Synonym: GTNG_2557

Alternate gene names: 138896194

Gene position: 2658320-2657109 (Counterclockwise)

Preceding gene: 138896195

Following gene: 138896193

Centisome position: 74.88

GC content: 57.1

Gene sequence:

>1212_bases
ATGGCACAATTTAAGTACGAGGGGCGCGATCGGAGCGGGCGAAAAAAGGCGGGGATGATCACCGCCGTCTCGCGGCGCGA
GGCAGCCATCAAACTGCGGGAAAAAGGGATTCGCCCGATGGTGCTTACTGAAGTGCCGCCATCGATATGGAACAAAGAAA
TTTCGTTCGGCCGCGCTGTGAAGCCGCAGCACTTTGTCATTTTTTTGCGCCAGTTTGCGACGCTCGTGCGCGCAGGGGTG
ACGATTGTTGACTCGGTTCATATTTTAGCCGAGCAGACCGAGAGCAAGTCGCTTGCTCGGGCGCTTTCGGACATCGAACA
GTCATTGCGCGGCGGGAATCCGCTCTCGACGGCCGCGGCGCGCCATCCACGCCTGTTTCCGTCGCTGTTTGTCAACATGG
TGCGCGCTGGAGAGGCGAGCGGAACGCTTGACGAGACGCTCGACCGTCTTGCTGATCATTTTGAAAAAATGCACCGGACG
CGGCAAAAAATCGTCTCGGCGCTCGCTTATCCGATCGCTATTGCCATCATCGCCACGGCGGTCGTCATCTTTTTGCTTGT
GGCTGTCGTGCCGGCGTTTGTGGAGATGTTTGCCGATTTTCACGCCGAGCTGCCGGCGATTACGAAGTTTGTGCTCAAAA
CAAGCGACGTGATGCAACATTACTGGTGGGCGATGGTGCTGCTGATCATGGGCGTATACGTATTGTTCATCGCTCTCCGG
CAGCGAAAGGAGGTGAAGTATTATTTCGATTACGCAGCGATGCGGCTGCCGATTTTTGGCAAACTTGTGCAAAAGGCGGC
GCTCGCCCGTATGACGCGAACGCTTAGCTCGCTCGTCTCGAGCTCGGTGCCGATTTTAGAGGCGCTGGCCATCGTCGGGC
GCGTCGTTGAAAATGAAGTGATCGCTTCCGTCGTTGATGAAGCACGCACCGCCCTTGAGCGCGGCCAGTCGCTCGCCGAG
CCGCTCCGTCGCCATTGGGCGTTTCCGCCGCTTGTGGCGCAAATGATCGCCATCGGCGAACGGACGGGGGCACTTGACGC
CATGCTCGGCAAAGTCGCCGACTTTTACGAAGCGGAAGTCGACACCGGCACCGATCGCCTCAAATCGCTCATCGAACCGA
TCATGATCGTGCTGCTTGCCGGTGTTGTTGGGACTATCGTCACCTCTATCATCATACCGATGTATGATATTTTCGATCGT
GTCCAACAATAG

Upstream 100 bases:

>100_bases
GGCATGCAGACGATGGAAATGAGCATCAAAGAGCTTGTGGCCGACGGGCGCATCGATCCACGTGCAGCCGAGGCGTATTT
GGTAGGGGAGCGTGGCGAAC

Downstream 100 bases:

>100_bases
TCAATAAGAATATATTCTTATTTTTATTTCCTCGTTATAGAATAGTAGGGGCAACATTCTAATTTAACAGAAAGGGAGAG
GGAATGATGTTGAAGCGAAT

Product: PilC II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MAQFKYEGRDRSGRKKAGMITAVSRREAAIKLREKGIRPMVLTEVPPSIWNKEISFGRAVKPQHFVIFLRQFATLVRAGV
TIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARHPRLFPSLFVNMVRAGEASGTLDETLDRLADHFEKMHRT
RQKIVSALAYPIAIAIIATAVVIFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLLIMGVYVLFIALR
QRKEVKYYFDYAAMRLPIFGKLVQKAALARMTRTLSSLVSSSVPILEALAIVGRVVENEVIASVVDEARTALERGQSLAE
PLRRHWAFPPLVAQMIAIGERTGALDAMLGKVADFYEAEVDTGTDRLKSLIEPIMIVLLAGVVGTIVTSIIIPMYDIFDR
VQQ

Sequences:

>Translated_403_residues
MAQFKYEGRDRSGRKKAGMITAVSRREAAIKLREKGIRPMVLTEVPPSIWNKEISFGRAVKPQHFVIFLRQFATLVRAGV
TIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARHPRLFPSLFVNMVRAGEASGTLDETLDRLADHFEKMHRT
RQKIVSALAYPIAIAIIATAVVIFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLLIMGVYVLFIALR
QRKEVKYYFDYAAMRLPIFGKLVQKAALARMTRTLSSLVSSSVPILEALAIVGRVVENEVIASVVDEARTALERGQSLAE
PLRRHWAFPPLVAQMIAIGERTGALDAMLGKVADFYEAEVDTGTDRLKSLIEPIMIVLLAGVVGTIVTSIIIPMYDIFDR
VQQ
>Mature_402_residues
AQFKYEGRDRSGRKKAGMITAVSRREAAIKLREKGIRPMVLTEVPPSIWNKEISFGRAVKPQHFVIFLRQFATLVRAGVT
IVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARHPRLFPSLFVNMVRAGEASGTLDETLDRLADHFEKMHRTR
QKIVSALAYPIAIAIIATAVVIFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLLIMGVYVLFIALRQ
RKEVKYYFDYAAMRLPIFGKLVQKAALARMTRTLSSLVSSSVPILEALAIVGRVVENEVIASVVDEARTALERGQSLAEP
LRRHWAFPPLVAQMIAIGERTGALDAMLGKVADFYEAEVDTGTDRLKSLIEPIMIVLLAGVVGTIVTSIIIPMYDIFDRV
QQ

Specific function: Involved in the translocation of the type IV pilin (pilA) [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=403, Percent_Identity=31.0173697270471, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1786295, Length=396, Percent_Identity=26.5151515151515, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44816; Mature: 44685

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQFKYEGRDRSGRKKAGMITAVSRREAAIKLREKGIRPMVLTEVPPSIWNKEISFGRAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCCCCC
KPQHFVIFLRQFATLVRAGVTIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
RHPRLFPSLFVNMVRAGEASGTLDETLDRLADHFEKMHRTRQKIVSALAYPIAIAIIATA
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVIFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLLIMGVYVLFIALR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRKEVKYYFDYAAMRLPIFGKLVQKAALARMTRTLSSLVSSSVPILEALAIVGRVVENEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IASVVDEARTALERGQSLAEPLRRHWAFPPLVAQMIAIGERTGALDAMLGKVADFYEAEV
HHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
DTGTDRLKSLIEPIMIVLLAGVVGTIVTSIIIPMYDIFDRVQQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1971619; 10984043 [H]