| Definition | Geobacillus thermodenitrificans NG80-2 chromosome, complete genome. |
|---|---|
| Accession | NC_009328 |
| Length | 3,550,319 |
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The map label for this gene is recJ [H]
Identifier: 138896148
GI number: 138896148
Start: 2615211
End: 2617568
Strand: Reverse
Name: recJ [H]
Synonym: GTNG_2511
Alternate gene names: 138896148
Gene position: 2617568-2615211 (Counterclockwise)
Preceding gene: 138896149
Following gene: 138896147
Centisome position: 73.73
GC content: 56.45
Gene sequence:
>2358_bases ATGTTAAAAGCGAAAACGCGTTGGGAAGTAGATTGCCCCGACGAACAGACGGTGAGGCGGCTGGCCGAGGAAGCCGACAT CGCGCCGTTGTTAGCAAAGCTTCTTGTCCGCCGTGGCGTGCGGACGGCAGCGGAAGCGGCCGCGTTTCTTGATCCCCTTG GACAGCCGTTTCATGATCCGTTTCTACTTGATGGGATGGAACGGGCGGTTCGGCGCTTAGAGCGGGCGATCAACACCGGC GAACTTGTGCTTGTCTATGGCGACTATGATGCCGATGGCGTCTGCAGTACGTCGGTGATGGTGAGCGCCCTTAAAGAGGC GGGAGCGTCGGTCGAATTCTACATTCCCAATCGCTTTACGGAAGGATACGGTCCGAATCTGGCGGCATTTCGTGCCGCGA AAGAGCGGGGCGTGTCCGTTATTGTGACGGTCGACAATGGAATTGCAGCGGTCGATGAAATCGCTGCCGCTAATGAGTGG GGGCTTGATGTCATTGTGACCGACCACCATGAACCGGGTCCGGTGTTACCGGAGGCGTACGCGATCATTCATCCGAAAAA GCCGGGAAGTACATACCCGTTTCGCGATTTGGCCGGCGTCGGCGTCGCATTTAAAGTTGCTCATGCGTTGCTTGGACGGG TGCCGCGCCATTTGCTTGATTTGGTAGCGATCGGGACGATTGCCGACTTAGTGCCGCTCGTTGGGGAAAACCGTCTGCTC GCCGCACAAGGGCTCGAGGCGCTGCGCGAAACGAACCGCGTTGGGTTGCGCGCCCTTTGGCGGCAATGCCGTATTGATGC GATGACAGTAAATGAACAGACGGTCGGTTTTGCTATCGCGCCGCGGCTGAATGCGGCCGGCCGCCTCGGCGGCGCCGATC CGGCCGTGGCGCTGTTAATGACAGACGATGAGGGCGAAGCCGCACGGTTGGCCCAAGAAATGGATGAACTAAACCGTGAA CGCCAGCAGCTTGTGGCGCAAATGGCTGAAGAAGCGGCAGAGATGGTACGGCGTCAGTTTCCGCCTGAAGAGCATCGCGT TCTTGTTGTCGCGGGTGAAGGATGGAATCCGGGGGTTGTTGGCATCGTTGCCTCGAAACTTGTTGAGCAGTTTTATCGTC CAGCGGTTGTGCTTTCGATGGATCGGGAAAAAGGAATCGCCAAAGGGTCGGCTCGCAGCATTCACGGCTTTGACCTCTTT GCAAGTTTATCGCAATGTCGTGACATTTTGCCTCATTTTGGTGGCCATCCGATGGCGGCGGGAATGACCTTAGCGCTTGA TGATGTCGAAGAACTGCGGGAGCGGTTGAATGCCATCGCCGCTAGGACGTTGTCAGATGATGATTTTACACCGCCGACGT TTATTGATGCTGCCTGCTCTGTTGATGAGCTGACGTTGTCGGCCGCGCGCAGCTTTGAGCGGCTTGCCCCGTTTGGTGTC AGCAATCCGCGGCCGCTTCTTCTTATTGAAGAGGTGGCGGTTGAAACGATGCGCCGCGTCGGAGCGAACGGCGCCCATAT GAAAGCGGTCTTTTCCCAAAATGGTGCAGCGATTGATGCCATTGGCTTCGGTCTCGGGCCGCTTTGCGAGGAGATCGCCC CTGGGGCGTGCGTCTCGGCCGTCGGAGAGCTTTCGGTAAATGAATGGAACGGGTTAGCGAAGCCGCAGTTGTCGTTATGT GATGTAGCGGTAAGCAGCTGCCAAGTGTTTGATGTCCGCGGCTGCCGCGATGTCCACCCGCTTATTGAGCGAATGCCGAA AGAGAAACGGCTGCTTGTCCTGTTTCGCCGCGAAACCGAAAATCAATTAGATTTGGCGGCGTTTCGCGACGAACTTCATT ATGTAGCAAGTGATGAAGAGGCGGGCGCCTTGGCGATTGACGGCCGCTATGTCGTGCTGCTTGACTTGCCGCCAAAGCTC CGCCGACTCGCTGCCTTGCTTGGCAACGGGCAGCCGGAGCGCATTTACGCGGTGTTTGCGCAGCCGGAAGCGCAGTTTTT TCGCACGTTTCCGACGCGCGACCATTTTAAATGGTTTTATGCCTTTTTGCATAAATACCGTTCGTTTCCGCTCGCCGAGC GGGGCGGACAGCTGGCGCGCGCCCGTGGCTGGACGGAAGAGACGGTTCATTTTATGGCGAAAGTATTTTTAGAGCTTGAG TTTATTCGCGAACAAGACGGCGTCATCTCACTTGTCCATGCGCCAGAGAAGCGTGATTTGCATGAATCACCGACATATCG CCGCCGGCGGGACGAGCTTGAGGTGGAACAGCAGTTATTATATTCCACTTATGAGCAGTTGAAACGCTGTTTAGCAGAAA TGACACGTTCGCAAACGTACGAGGAGGCAAACGTATAA
Upstream 100 bases:
>100_bases GATGGTGCATATCAATCCGTATGATCCGCAAAAAAACACGTAATGTCGTTGCCTGCCCTTTTCTCCTTTTTGTATAATAA GGAGAGTTGAGGTGGGGGAC
Downstream 100 bases:
>100_bases TGGATTTAAAACAGTATATTACAATCGTGCCTGATTTTCCGAAACCGGGAATTTTATTTAAAGACATTACGACGCTGATG GACAACGGGGAAGCGTACAA
Product: single-strand DNA-specific exonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 785; Mature: 785
Protein sequence:
>785_residues MLKAKTRWEVDCPDEQTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDPLGQPFHDPFLLDGMERAVRRLERAINTG ELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEW GLDVIVTDHHEPGPVLPEAYAIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL AAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGADPAVALLMTDDEGEAARLAQEMDELNRE RQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDLF ASLSQCRDILPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAARSFERLAPFGV SNPRPLLLIEEVAVETMRRVGANGAHMKAVFSQNGAAIDAIGFGLGPLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLC DVAVSSCQVFDVRGCRDVHPLIERMPKEKRLLVLFRRETENQLDLAAFRDELHYVASDEEAGALAIDGRYVVLLDLPPKL RRLAALLGNGQPERIYAVFAQPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLAERGGQLARARGWTEETVHFMAKVFLELE FIREQDGVISLVHAPEKRDLHESPTYRRRRDELEVEQQLLYSTYEQLKRCLAEMTRSQTYEEANV
Sequences:
>Translated_785_residues MLKAKTRWEVDCPDEQTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDPLGQPFHDPFLLDGMERAVRRLERAINTG ELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEW GLDVIVTDHHEPGPVLPEAYAIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL AAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGADPAVALLMTDDEGEAARLAQEMDELNRE RQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDLF ASLSQCRDILPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAARSFERLAPFGV SNPRPLLLIEEVAVETMRRVGANGAHMKAVFSQNGAAIDAIGFGLGPLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLC DVAVSSCQVFDVRGCRDVHPLIERMPKEKRLLVLFRRETENQLDLAAFRDELHYVASDEEAGALAIDGRYVVLLDLPPKL RRLAALLGNGQPERIYAVFAQPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLAERGGQLARARGWTEETVHFMAKVFLELE FIREQDGVISLVHAPEKRDLHESPTYRRRRDELEVEQQLLYSTYEQLKRCLAEMTRSQTYEEANV >Mature_785_residues MLKAKTRWEVDCPDEQTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDPLGQPFHDPFLLDGMERAVRRLERAINTG ELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEW GLDVIVTDHHEPGPVLPEAYAIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL AAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGADPAVALLMTDDEGEAARLAQEMDELNRE RQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDLF ASLSQCRDILPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAARSFERLAPFGV SNPRPLLLIEEVAVETMRRVGANGAHMKAVFSQNGAAIDAIGFGLGPLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLC DVAVSSCQVFDVRGCRDVHPLIERMPKEKRLLVLFRRETENQLDLAAFRDELHYVASDEEAGALAIDGRYVVLLDLPPKL RRLAALLGNGQPERIYAVFAQPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLAERGGQLARARGWTEETVHFMAKVFLELE FIREQDGVISLVHAPEKRDLHESPTYRRRRDELEVEQQLLYSTYEQLKRCLAEMTRSQTYEEANV
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=489, Percent_Identity=37.4233128834356, Blast_Score=274, Evalue=1e-74,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 86707; Mature: 86707
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKAKTRWEVDCPDEQTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDPLGQPFHDP CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC FLLDGMERAVRRLERAINTGELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFT HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC EGYGPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEWGLDVIVTDHHEPGPVLPEAY CCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCE AIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL EEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH AAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGADPAVALLM HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEE TDDEGEAARLAQEMDELNRERQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVV ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH GIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDLFASLSQCRDILPHFGGHPMAA HHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC GMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAARSFERLAPFGV CCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCC SNPRPLLLIEEVAVETMRRVGANGAHMKAVFSQNGAAIDAIGFGLGPLCEEIAPGACVSA CCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEHHCCHHHHHHHHCCCHHHHH VGELSVNEWNGLAKPQLSLCDVAVSSCQVFDVRGCRDVHPLIERMPKEKRLLVLFRRETE HHCCCCHHCCCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCC NQLDLAAFRDELHYVASDEEAGALAIDGRYVVLLDLPPKLRRLAALLGNGQPERIYAVFA CCHHHHHHHHHHHHEECCCCCCEEEECCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEE QPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLAERGGQLARARGWTEETVHFMAKVFLELE CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCHHHHHHHHHHHHHHHH FIREQDGVISLVHAPEKRDLHESPTYRRRRDELEVEQQLLYSTYEQLKRCLAEMTRSQTY HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EEANV HHCCC >Mature Secondary Structure MLKAKTRWEVDCPDEQTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDPLGQPFHDP CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC FLLDGMERAVRRLERAINTGELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFT HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC EGYGPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEWGLDVIVTDHHEPGPVLPEAY CCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCE AIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL EEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH AAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGADPAVALLM HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEE TDDEGEAARLAQEMDELNRERQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVV ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH GIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDLFASLSQCRDILPHFGGHPMAA HHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC GMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAARSFERLAPFGV CCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCC SNPRPLLLIEEVAVETMRRVGANGAHMKAVFSQNGAAIDAIGFGLGPLCEEIAPGACVSA CCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEHHCCHHHHHHHHCCCHHHHH VGELSVNEWNGLAKPQLSLCDVAVSSCQVFDVRGCRDVHPLIERMPKEKRLLVLFRRETE HHCCCCHHCCCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCC NQLDLAAFRDELHYVASDEEAGALAIDGRYVVLLDLPPKLRRLAALLGNGQPERIYAVFA CCHHHHHHHHHHHHEECCCCCCEEEECCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEE QPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLAERGGQLARARGWTEETVHFMAKVFLELE CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCHHHHHHHHHHHHHHHH FIREQDGVISLVHAPEKRDLHESPTYRRRRDELEVEQQLLYSTYEQLKRCLAEMTRSQTY HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EEANV HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]