Click here to switch to the map view.

The map label for this gene is rsfA [H]

Identifier: 138896138

GI number: 138896138

Start: 2603801

End: 2604451

Strand: Direct

Name: rsfA [H]

Synonym: GTNG_2501

Alternate gene names: 138896138

Gene position: 2603801-2604451 (Clockwise)

Preceding gene: 138896127

Following gene: 138896152

Centisome position: 73.34

GC content: 52.53

Gene sequence:

>651_bases
ATGAAAACAAGACAAGATGCATGGTCACACGAAGAAGACGTACTGCTCGCTGAGACGGTACTGCAATACATACGCGAAGG
AAAGACCCAACTCGCCGCTTTTGAAGAGGTCGGAAGACAGTTGCACCGGACAGCGGCAGCATGCGGCTTCCGCTGGAACG
CCGAAGTGCGGAAACGGTATCTCGACGCCATTGAACAGGCAAAAAAGCAACGAAAAGAGCGAAAACGAGCGTTAGAGATG
GTGAAAAAATGGCAAAAAGAAGTGAACGCTATCACATTGAGCGTTCCTGATAAGAACACGTCTGCCGAAGGGTCATCCCC
GTTTCTCCCGGCTGCTCCGCTGACGCTCGACCAATGCATTTCCTTTTTGCAAACGCTACGGCGCGATGCGGAACAGTTGG
AGACCGTCCGCCAGGAAAATGAGCGGCTGAAACGCGAACGAGCCGAATGGCAAGCGCGCAACGAGCAGCTGGCACAAAAG
CTATCGCGCCTCGAGGCACGACAGATGACCGTTCAAGAAGATTACGAGGCGCTCATCAAAATTATGACTCGCGCCCGCCA
GCTTGCTTCTGAAGAAGGTGAACGCTTTTCTCTCGCACATCTACTTCTTGCGGAAACGGGCGAACAAAACGAACCAATGG
CTCATTCATAA

Upstream 100 bases:

>100_bases
CAGGAGGGAAAATGGCAAAAATGAAGGGAGCGAAGTTTAAATTAGAAAAACAACGGAAAAACTATTATCATATCAACATT
ATCTTTGCGGGGTGGACAGC

Downstream 100 bases:

>100_bases
TAAAACAAGAGGTGATGGAGTTCATCACCTCTTGTTTATGACCAATTACGTTTTCATTCGCCAACACGAGCAATCGGGAT
GTCTTTCAACAGTTCGTTAA

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKTRQDAWSHEEDVLLAETVLQYIREGKTQLAAFEEVGRQLHRTAAACGFRWNAEVRKRYLDAIEQAKKQRKERKRALEM
VKKWQKEVNAITLSVPDKNTSAEGSSPFLPAAPLTLDQCISFLQTLRRDAEQLETVRQENERLKRERAEWQARNEQLAQK
LSRLEARQMTVQEDYEALIKIMTRARQLASEEGERFSLAHLLLAETGEQNEPMAHS

Sequences:

>Translated_216_residues
MKTRQDAWSHEEDVLLAETVLQYIREGKTQLAAFEEVGRQLHRTAAACGFRWNAEVRKRYLDAIEQAKKQRKERKRALEM
VKKWQKEVNAITLSVPDKNTSAEGSSPFLPAAPLTLDQCISFLQTLRRDAEQLETVRQENERLKRERAEWQARNEQLAQK
LSRLEARQMTVQEDYEALIKIMTRARQLASEEGERFSLAHLLLAETGEQNEPMAHS
>Mature_216_residues
MKTRQDAWSHEEDVLLAETVLQYIREGKTQLAAFEEVGRQLHRTAAACGFRWNAEVRKRYLDAIEQAKKQRKERKRALEM
VKKWQKEVNAITLSVPDKNTSAEGSSPFLPAAPLTLDQCISFLQTLRRDAEQLETVRQENERLKRERAEWQARNEQLAQK
LSRLEARQMTVQEDYEALIKIMTRARQLASEEGERFSLAHLLLAETGEQNEPMAHS

Specific function: Seems to improve the efficiency of sporulation by fine- tuning the expression of genes in the sigma F regulon, particularly the timing of their expression. Negatively regulates spoIIR and its own synthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Myb-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014243
- InterPro:   IPR017877 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25089; Mature: 25089

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS00037 MYB_1 ; PS50090 MYB_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRQDAWSHEEDVLLAETVLQYIREGKTQLAAFEEVGRQLHRTAAACGFRWNAEVRKRY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LDAIEQAKKQRKERKRALEMVKKWQKEVNAITLSVPDKNTSAEGSSPFLPAAPLTLDQCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
SFLQTLRRDAEQLETVRQENERLKRERAEWQARNEQLAQKLSRLEARQMTVQEDYEALIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMTRARQLASEEGERFSLAHLLLAETGEQNEPMAHS
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKTRQDAWSHEEDVLLAETVLQYIREGKTQLAAFEEVGRQLHRTAAACGFRWNAEVRKRY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LDAIEQAKKQRKERKRALEMVKKWQKEVNAITLSVPDKNTSAEGSSPFLPAAPLTLDQCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
SFLQTLRRDAEQLETVRQENERLKRERAEWQARNEQLAQKLSRLEARQMTVQEDYEALIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMTRARQLASEEGERFSLAHLLLAETGEQNEPMAHS
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377; 10629188 [H]