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The map label for this gene is yrrB [H]

Identifier: 138896132

GI number: 138896132

Start: 2598010

End: 2598678

Strand: Reverse

Name: yrrB [H]

Synonym: GTNG_2495

Alternate gene names: 138896132

Gene position: 2598678-2598010 (Counterclockwise)

Preceding gene: 138896133

Following gene: 138896131

Centisome position: 73.2

GC content: 53.51

Gene sequence:

>669_bases
ATGAGCGTGGCCAATCTCAATGAACAGGGGTTAGCGCATATGCGCGCAGGAGAGTACGAAGAAGCGCTTCGCTGCTTTTC
TGAAGCAGTGAATGAACATCCGGATGACCCGGCTGGTTATATTAACATCGGTACCGTTCTTGCCGCTGCCGGCGAGGAAG
AGAAGGCGCTCGAATGCTTCCGACAGGCGCTTATGCTTGATGAGCGAGCAGCGGCAGCCTATTATGGCATCGGTACGGTC
CACTACAGGCGCGAGCAGTTTGCTCAGGCGAAAGATATGTTTGAACGGGCGCTGGCGCTCGGGCTGAATGATGCGGATAC
GCATTTTATGCTTGGAATGTCATTATGTCGGCTTGAGATGCCGCGCTTGGCGCTGCCGTATTTGCAGCGGGCCGCTGAAC
TGAATGAAGAAGATGCCGAAGCGCTCTTTCAACTTGGTCTTTGTCTCGCTGCTCTCGATTATGTCGATGAGGCGAAACGG
TATTTCGAAAAAACGTTGGAACGGAATCCGCGCCATGCGGATGCGTACTACAATTTAGGCGTCATTTATGCGTACAAAGA
TGATCTGGCCGCTGCCCGTGATTTATTTGCCGCCGCTTTAGATGCCAACCCGGATCACGTGCTCGCCGGGTACGGAAAGA
AACTGATGGAAAAGCGGCTTGCGCCGTAA

Upstream 100 bases:

>100_bases
GCACGAGCGGAAGAAAAACCTCAACCCGGAGTCGGGTTGAGGTGTTTTTTGCAATTGCTCGAAAAGAACGAACATATGTG
CTAAACTAGAAGCAGGAGGG

Downstream 100 bases:

>100_bases
AAGGCAGGGGATGACTGTTGCAAGAGCAGCAATCGCTTGCGCTGGACGGCCGCACGTTTATTAAAGGGGTGTGTTTGGCC
GTCATTTTTCATAACGAGGA

Product: TPR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSVANLNEQGLAHMRAGEYEEALRCFSEAVNEHPDDPAGYINIGTVLAAAGEEEKALECFRQALMLDERAAAAYYGIGTV
HYRREQFAQAKDMFERALALGLNDADTHFMLGMSLCRLEMPRLALPYLQRAAELNEEDAEALFQLGLCLAALDYVDEAKR
YFEKTLERNPRHADAYYNLGVIYAYKDDLAAARDLFAAALDANPDHVLAGYGKKLMEKRLAP

Sequences:

>Translated_222_residues
MSVANLNEQGLAHMRAGEYEEALRCFSEAVNEHPDDPAGYINIGTVLAAAGEEEKALECFRQALMLDERAAAAYYGIGTV
HYRREQFAQAKDMFERALALGLNDADTHFMLGMSLCRLEMPRLALPYLQRAAELNEEDAEALFQLGLCLAALDYVDEAKR
YFEKTLERNPRHADAYYNLGVIYAYKDDLAAARDLFAAALDANPDHVLAGYGKKLMEKRLAP
>Mature_221_residues
SVANLNEQGLAHMRAGEYEEALRCFSEAVNEHPDDPAGYINIGTVLAAAGEEEKALECFRQALMLDERAAAAYYGIGTVH
YRREQFAQAKDMFERALALGLNDADTHFMLGMSLCRLEMPRLALPYLQRAAELNEEDAEALFQLGLCLAALDYVDEAKRY
FEKTLERNPRHADAYYNLGVIYAYKDDLAAARDLFAAALDANPDHVLAGYGKKLMEKRLAP

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI167466177, Length=205, Percent_Identity=24.8780487804878, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI167466175, Length=205, Percent_Identity=24.8780487804878, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI32307148, Length=189, Percent_Identity=30.1587301587302, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI32307150, Length=189, Percent_Identity=30.1587301587302, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI224809432, Length=206, Percent_Identity=29.6116504854369, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115532692, Length=189, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115532690, Length=189, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6319387, Length=166, Percent_Identity=26.5060240963855, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24659892, Length=187, Percent_Identity=28.3422459893048, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17647755, Length=189, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24585827, Length=189, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24585829, Length=189, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 24804; Mature: 24673

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVANLNEQGLAHMRAGEYEEALRCFSEAVNEHPDDPAGYINIGTVLAAAGEEEKALECF
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHCCCHHHHHHHH
RQALMLDERAAAAYYGIGTVHYRREQFAQAKDMFERALALGLNDADTHFMLGMSLCRLEM
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
PRLALPYLQRAAELNEEDAEALFQLGLCLAALDYVDEAKRYFEKTLERNPRHADAYYNLG
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCE
VIYAYKDDLAAARDLFAAALDANPDHVLAGYGKKLMEKRLAP
EEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVANLNEQGLAHMRAGEYEEALRCFSEAVNEHPDDPAGYINIGTVLAAAGEEEKALECF
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHCCCHHHHHHHH
RQALMLDERAAAAYYGIGTVHYRREQFAQAKDMFERALALGLNDADTHFMLGMSLCRLEM
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
PRLALPYLQRAAELNEEDAEALFQLGLCLAALDYVDEAKRYFEKTLERNPRHADAYYNLG
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCE
VIYAYKDDLAAARDLFAAALDANPDHVLAGYGKKLMEKRLAP
EEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]