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The map label for this gene is yrrC [H]

Identifier: 138896131

GI number: 138896131

Start: 2595629

End: 2597992

Strand: Reverse

Name: yrrC [H]

Synonym: GTNG_2494

Alternate gene names: 138896131

Gene position: 2597992-2595629 (Counterclockwise)

Preceding gene: 138896132

Following gene: 138896130

Centisome position: 73.18

GC content: 53.47

Gene sequence:

>2364_bases
TTGCAAGAGCAGCAATCGCTTGCGCTGGACGGCCGCACGTTTATTAAAGGGGTGTGTTTGGCCGTCATTTTTCATAACGA
GGAGACGTTGTATACCGTTGTCCGTATCCGCGTCGAAGAAACGAATGAAGCGGCTGCGGAGGAAGAAGTGGTCGTCACCG
GCTATTTTCCACGTTTAAATGAAGGGGACGTGTACATCTTTTACGGGCAATTCCGCCAACATCCGCGCTTTGGCCGCCAG
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCGAACACGAAAGAAGGAGTCATCGATTATTTGTCGAGCGGCTTGTTTAA
GGGGATCGGCAAAAAAACAGCGACAGCGATTGTCGATGCGCTTGGTGAAAACGCGATCGCCGCCATTTTGCGTGATCCAG
GAGCGCTCGAACGCGTGCCCAAGCTGACGAAACAAAAAGCGAAGCAATTGTACGAAACGCTCTGCGCCCACGAAGGGCTC
GAACAGACGATGATCGCCCTCGCTCAGCTCGGTTTTGGTCCACAGCTGGCAATGAAAATTTACCAAGTATACGGCGAAGA
GACAATGGACATCATTCATGAAAACCCGTACAAGCTCGTCGAAGATATTGAAGGGATCGGTTTTGGTCGCGCCGATGAGC
TCGGGCGGCAGCTCGGCATTTCCGGCAGTCATCCAGCCCGGCTGCGCGCCGCTTGTCTGTTTGTCCTTGAGCAGGCATGC
TTGCAAGAAGGGCACGTCTACATGAAGAAAGAAGAGCTCGTCAGCCGCATTGGGGAGCTGCTTGGCGGAAGGTCGAACGG
AGCGGTTGATGGACAAGCCATCGAACAGACGCTCCTTATGTTAAGCGAAGAAGGAAAGATGATCGCGGAACAAGGCCGCT
ATTATCTTCCTTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCTAACATTCGGCGGTTGCTCGGGCAAACGCCACCATCG
GCCTCATTTCCGGAGTCGGAGTTTTTGCTGGCGCTCGGGGCGCTTGAAGAACGACTCGGGATGCAATATGCTCCGCAGCA
AAAAGAAGCGATTCAACGGGCGCTGTCTTCGCCGCTCTTTATTTTGACGGGAGGTCCAGGAACAGGAAAAACAACGGTCA
TTAAAGGAATTGTTGAGCTGTTTGCGGTTCTAAATGGCATATCACTTTCCCCCGACGATTACAAAAACGGTGAACCGTTT
CCTGTGCTGCTCGCTGCTCCGACTGGACGGGCTGCAAAGCGGATGAGTGAGGCGACCGGGCTGCCGGCGGCGACGATTCA
CCGGCTGCTCGGCTGGAATGGAGCGGAAGGGTTCAGCCACGATGAAAATGAGCCGATTGCCGGTAAGCTGCTTGTCGTCG
ATGAGGTGTCGATGGTCGATACGTGGTTGGCTAATCACCTGTTAAAAGCGGTGCCTAATGGGATGCAAGTCATCTTCGTT
GGCGATGAAGACCAGCTTCCATCCGTCGGGCCAGGGCAAGTGTTGAAAGATTTGCTCGAGTCGGGTGTTATCCCGTCCGT
GCGGCTGACCGAGGTGTACCGCCAGGCGGAAGGGTCATCGATTATCGAGCTCGCCCATGAGATGAAGCGTGGAAACGTGC
CGGCCGACTTGACTGCCCCGAAGGCGGATCGTTCGTTCATCCGCTGCCGCGCCGGACAAGTGGCTAGTGTCGTGCGTCAA
ATCGCCGAAAATGCGCGTAACAAAGGGTTTTCCGTCAAAGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCAGCCGG
TATCGATCAGCTAAACAAAGTGCTGCAGGAGCTGTTTAATCCACCAACGGATGGGAAGCGAGAACTTTCCGTTGGCGACG
TAGTGTATCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAATCAACCGGAAGACAACGTGTTTAACGGCGATATCGGTGAA
GTCGTGGCCATTTTTTATGCCAAAGAAAATACAGAAAAGCAAGATTTGCTCGTCGTCTCATTTGACGGCATTGAAGTGAC
GTATACAAGGCAAGATTTAGCGCAAATTACCCATGCATATTGCTGCTCCGTCCATAAGGCGCAAGGGAGCGAGTTTCCGA
TTGTCATTTTGCCTGTTGTCAAAAGTTATTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAA
CAATTTCTGATTTTATGCGGGGAGGAAGAAGCATTCCGGTTTGGTGTTGCCCAGCGGGGCGACGGAGCGCGCCAGACGGC
GCTTGCAGAAAAGTTGGCGGCTTCGACTGCGCTGTTTGTCGAAGGGGAACTGCCGCTTGAGGATGCGAACATCGGGATGG
AAAACGTTACGCCGTATGACTTTATGGACGATGGGTCAAGCTAA

Upstream 100 bases:

>100_bases
TTGCCGCCGCTTTAGATGCCAACCCGGATCACGTGCTCGCCGGGTACGGAAAGAAACTGATGGAAAAGCGGCTTGCGCCG
TAAAAGGCAGGGGATGACTG

Downstream 100 bases:

>100_bases
AAGTGGCTGGAAAGGTGGGAGAATGATGCGGACGTTTTCCGACGTCAAAGGGCTTCCCATTTATGAACAAACGACAGGGA
AAGCGGTCGGGACGATCGCT

Product: exodeoxyribonuclease V subunit alpha

Products: Hydrolyzed double-stranded DNA [C]

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 787

Protein sequence:

>787_residues
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDALGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLYFAEKGIASNIRRLLGQTPPS
ASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPF
PVLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSHDENEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAPKADRSFIRCRAGQVASVVRQ
IAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFNPPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
VVAIFYAKENTEKQDLLVVSFDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYDFMDDGSS

Sequences:

>Translated_787_residues
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDALGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLYFAEKGIASNIRRLLGQTPPS
ASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPF
PVLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSHDENEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAPKADRSFIRCRAGQVASVVRQ
IAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFNPPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
VVAIFYAKENTEKQDLLVVSFDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYDFMDDGSS
>Mature_787_residues
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDALGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLYFAEKGIASNIRRLLGQTPPS
ASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPF
PVLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSHDENEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAPKADRSFIRCRAGQVASVVRQ
IAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFNPPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
VVAIFYAKENTEKQDLLVVSFDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYDFMDDGSS

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=420, Percent_Identity=28.0952380952381, Blast_Score=114, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5 [C]

Molecular weight: Translated: 86350; Mature: 86350

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLN
CCCCHHHCCCCHHHHHHHHHHEEEECCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCC
EGDVYIFYGQFRQHPRFGRQYAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDA
CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
LGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGLEQTMIALAQLGFGPQLAMKI
HCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH
YQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
HHHHCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLY
HHCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCEECCHHH
FAEKGIASNIRRLLGQTPPSASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLF
HHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEE
ILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPFPVLLAAPTGRAAKRMSEATG
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCC
LPAATIHRLLGWNGAEGFSHDENEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEE
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAP
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
KADRSFIRCRAGQVASVVRQIAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFN
CCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCC
PPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGEVVAIFYAKENTEKQDLLVVS
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEE
FDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
ECCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCC
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYD
EEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCC
FMDDGSS
CCCCCCC
>Mature Secondary Structure
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLN
CCCCHHHCCCCHHHHHHHHHHEEEECCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCC
EGDVYIFYGQFRQHPRFGRQYAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDA
CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
LGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGLEQTMIALAQLGFGPQLAMKI
HCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH
YQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
HHHHCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLY
HHCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCEECCHHH
FAEKGIASNIRRLLGQTPPSASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLF
HHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEE
ILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPFPVLLAAPTGRAAKRMSEATG
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCC
LPAATIHRLLGWNGAEGFSHDENEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEE
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAP
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
KADRSFIRCRAGQVASVVRQIAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFN
CCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCC
PPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGEVVAIFYAKENTEKQDLLVVS
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEE
FDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
ECCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCC
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYD
EEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCC
FMDDGSS
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Double-stranded DNA; H2O; DNA [C]

Specific reaction: Double-stranded DNA + H2O = Hydrolyzed double-stranded DNA Protein + DNA = Protein-DNA [C]

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]