Click here to switch to the map view.

The map label for this gene is psd [H]

Identifier: 138896101

GI number: 138896101

Start: 2569117

End: 2569752

Strand: Reverse

Name: psd [H]

Synonym: GTNG_2464

Alternate gene names: 138896101

Gene position: 2569752-2569117 (Counterclockwise)

Preceding gene: 138896105

Following gene: 138896099

Centisome position: 72.38

GC content: 49.53

Gene sequence:

>636_bases
ATGGAAAAAAGCTTAAAAAATTATAAAACATTGCAGCAACTGTTCGTCCGCCGACTCAAAGCCGGAACAAGACCGGTTGA
TGCTGATGAACATGCCATCGTCAGTCCGGTTGATGCGATCATTGAAGAAATGGGGACGATTCAAGAAAACAGCGAAATAA
TTGTCAAAGGGAAACCGTATTCGATTGCGGAGATGCTTGGCAGTGCCGAAGCTGCGCAACCGTATGTGAACGGGTTCTTT
TTTATTCTGTATTTGAGCCCAAGCCATTATCATCGCATTCATAGCCCAATATCTGGCGTGATCGAAAAACAGTGGTCGCT
CGGCCGCAAGTCATATCCGGTCAACCGTCTCGGCTTAAAATACGGGCGGCGGCCGCTCGAAAAAAATTATCGTCTCATCA
CAGAGGTCACGGCCGGCGGCAAGCGCATGGCAATTGTCAAAATCGGCGCCATGTTTGTTAACAGCATCGAGCTGACCCAT
AAGGAAGAACGGTTGGTGAAAGGGGAGGAAATGGCGTATTTTTCGTTCGGCTCGACAGTTGTGCTGTTGTTTGAACAAGG
AAGTTTTGCGCCCGACCCGCGCATCCATCCGCCGATGCCGATTAAAGTCGGCGAGCGCCTTGGCTATTGGTGCTAG

Upstream 100 bases:

>100_bases
CTCGCTTTCCTCGAAGCTGCTCGCTTCGTTTGCTCGATCGCGTCTCAGTGCACTGTTGATACCATCGTATGCGAAAATTT
ATCATATTAACCAAGAAGAA

Downstream 100 bases:

>100_bases
GCGCGGGCTGTTTGGACAAACAAAAAAAAGCCCAAGGGCCCTTCGTTTATGATGACAATTTAATTTTATGAGTCAATGAC
CGGCGCTGGATTTCCTTTTC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MEKSLKNYKTLQQLFVRRLKAGTRPVDADEHAIVSPVDAIIEEMGTIQENSEIIVKGKPYSIAEMLGSAEAAQPYVNGFF
FILYLSPSHYHRIHSPISGVIEKQWSLGRKSYPVNRLGLKYGRRPLEKNYRLITEVTAGGKRMAIVKIGAMFVNSIELTH
KEERLVKGEEMAYFSFGSTVVLLFEQGSFAPDPRIHPPMPIKVGERLGYWC

Sequences:

>Translated_211_residues
MEKSLKNYKTLQQLFVRRLKAGTRPVDADEHAIVSPVDAIIEEMGTIQENSEIIVKGKPYSIAEMLGSAEAAQPYVNGFF
FILYLSPSHYHRIHSPISGVIEKQWSLGRKSYPVNRLGLKYGRRPLEKNYRLITEVTAGGKRMAIVKIGAMFVNSIELTH
KEERLVKGEEMAYFSFGSTVVLLFEQGSFAPDPRIHPPMPIKVGERLGYWC
>Mature_211_residues
MEKSLKNYKTLQQLFVRRLKAGTRPVDADEHAIVSPVDAIIEEMGTIQENSEIIVKGKPYSIAEMLGSAEAAQPYVNGFF
FILYLSPSHYHRIHSPISGVIEKQWSLGRKSYPVNRLGLKYGRRPLEKNYRLITEVTAGGKRMAIVKIGAMFVNSIELTH
KEERLVKGEEMAYFSFGSTVVLLFEQGSFAPDPRIHPPMPIKVGERLGYWC

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790604, Length=205, Percent_Identity=32.1951219512195, Blast_Score=104, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71980840, Length=232, Percent_Identity=25.8620689655172, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71980843, Length=232, Percent_Identity=25.8620689655172, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321609, Length=195, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 23887; Mature: 23887

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKSLKNYKTLQQLFVRRLKAGTRPVDADEHAIVSPVDAIIEEMGTIQENSEIIVKGKPY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCHHHHHHHHHCCCCCCCEEEEECCCC
SIAEMLGSAEAAQPYVNGFFFILYLSPSHYHRIHSPISGVIEKQWSLGRKSYPVNRLGLK
HHHHHHCCCHHCCHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
YGRRPLEKNYRLITEVTAGGKRMAIVKIGAMFVNSIELTHKEERLVKGEEMAYFSFGSTV
HCCCCCCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEE
VLLFEQGSFAPDPRIHPPMPIKVGERLGYWC
EEEEECCCCCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MEKSLKNYKTLQQLFVRRLKAGTRPVDADEHAIVSPVDAIIEEMGTIQENSEIIVKGKPY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCHHHHHHHHHCCCCCCCEEEEECCCC
SIAEMLGSAEAAQPYVNGFFFILYLSPSHYHRIHSPISGVIEKQWSLGRKSYPVNRLGLK
HHHHHHCCCHHCCHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
YGRRPLEKNYRLITEVTAGGKRMAIVKIGAMFVNSIELTHKEERLVKGEEMAYFSFGSTV
HCCCCCCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEE
VLLFEQGSFAPDPRIHPPMPIKVGERLGYWC
EEEEECCCCCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA