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The map label for this gene is holA [H]

Identifier: 138896086

GI number: 138896086

Start: 2557582

End: 2558601

Strand: Reverse

Name: holA [H]

Synonym: GTNG_2449

Alternate gene names: 138896086

Gene position: 2558601-2557582 (Counterclockwise)

Preceding gene: 138896088

Following gene: 138896084

Centisome position: 72.07

GC content: 53.73

Gene sequence:

>1020_bases
ATGCTGGAACGCGTATGGGGAAACATCGAAAAACAGCGGTTTTCTCCCCTTTATTTATTATATGGCAGCGAGTCATTTTT
ATTACAGGAAACGTACGAGCGATTAGTGAAGGCGGCGCTTGGGGAGGAAGAACACGAATGGAACTTAGCGGTGTACGACT
GCGAGGAAACGCCGGTACAAGCGGCGCTTGAAGAGGCGGAAACGGTGCCGTTTTTCGGGGAACGGCGCGTCATTCTTATT
AAACATCCGTATTTTTTTACAGCCGAAAAAGACAAGGAGATCGAGCACGATTTGGCGAAGCTTGAGGCGTACTTCAAAGC
GCCGGCACCGTTTTCGATCGTCGTCTTTTTCGCACCGTATGACAAACTCGATGAGCGAAAAAAAATCACAAAACTCGCCA
AAGAACATAGCGAAGTCGTCGTCGCCGCCTCGCTCGCTGAAGGGGAGTTGCGCGCTTGGGTGCGGCGACGGATCGAGAGC
CAAGGAGCGCAAATTAGCGACGAAGCGATTGATGCACTCTTGCGGCGAGCTGGAACGCAGCTGGCCGCATTGGCGAACGA
AATCAATAAGCTAGCCTTGTTTGCCGGGCCGGGTGGAACGGTGGAGGCAGAGGCAGTCGAGCAGCTTGTCGCCCGCACAC
CGGAAGAAAATGTGTTCGCTCTTGTCGAGCAAGTAGCGAAGCGCAACATTCCCGCGGCGTTGCAGACATTTTATGATTTG
CTGGAAAACAATGAAGAACCGATCAAAATTTTGGCGCTGCTCGCCGGCCATTTTCGTCTGTTGGCGCAAGTGAAGTGGCT
CGCTCAAGCGGGCTATGGACAGACACAAATCGCCTCAGCGCTGAAAGTACACCCGTTTCGCGTCAAGCTCGCCCTTGGTC
AAGCAGCTCGTTTTTCTGAGCAGGAGCTGGCCAAGGCGATTGACGAACTTGCCGCTGCGGATTACGAAGTGAAAAGCGGA
GCGATGGATCGCCGTTTGGCGGTGGAGCTGTTGCTTATGCGGTGGGGCGGTCGGCAATAA

Upstream 100 bases:

>100_bases
AAGGGGAACCGGTTTTCTCGACAGCCGGTTCCCTTGTAAAATGGCGAAAAACGGTGTATCTTTCTAGCAGGGAATCTTGC
TAGAGAATGGAGAAGGGAAC

Downstream 100 bases:

>100_bases
AAAAAGCCAGCGCCCTTCACTGTGCGCTCAATAAGCAAAGCTTGTTTTCTCTTGGATGACATGGACTAACTAGCGAGGCT
TCATTCATTTCATTAAGGAA

Product: DNA polymerase III subunit delta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLERVWGNIEKQRFSPLYLLYGSESFLLQETYERLVKAALGEEEHEWNLAVYDCEETPVQAALEEAETVPFFGERRVILI
KHPYFFTAEKDKEIEHDLAKLEAYFKAPAPFSIVVFFAPYDKLDERKKITKLAKEHSEVVVAASLAEGELRAWVRRRIES
QGAQISDEAIDALLRRAGTQLAALANEINKLALFAGPGGTVEAEAVEQLVARTPEENVFALVEQVAKRNIPAALQTFYDL
LENNEEPIKILALLAGHFRLLAQVKWLAQAGYGQTQIASALKVHPFRVKLALGQAARFSEQELAKAIDELAAADYEVKSG
AMDRRLAVELLLMRWGGRQ

Sequences:

>Translated_339_residues
MLERVWGNIEKQRFSPLYLLYGSESFLLQETYERLVKAALGEEEHEWNLAVYDCEETPVQAALEEAETVPFFGERRVILI
KHPYFFTAEKDKEIEHDLAKLEAYFKAPAPFSIVVFFAPYDKLDERKKITKLAKEHSEVVVAASLAEGELRAWVRRRIES
QGAQISDEAIDALLRRAGTQLAALANEINKLALFAGPGGTVEAEAVEQLVARTPEENVFALVEQVAKRNIPAALQTFYDL
LENNEEPIKILALLAGHFRLLAQVKWLAQAGYGQTQIASALKVHPFRVKLALGQAARFSEQELAKAIDELAAADYEVKSG
AMDRRLAVELLLMRWGGRQ
>Mature_339_residues
MLERVWGNIEKQRFSPLYLLYGSESFLLQETYERLVKAALGEEEHEWNLAVYDCEETPVQAALEEAETVPFFGERRVILI
KHPYFFTAEKDKEIEHDLAKLEAYFKAPAPFSIVVFFAPYDKLDERKKITKLAKEHSEVVVAASLAEGELRAWVRRRIES
QGAQISDEAIDALLRRAGTQLAALANEINKLALFAGPGGTVEAEAVEQLVARTPEENVFALVEQVAKRNIPAALQTFYDL
LENNEEPIKILALLAGHFRLLAQVKWLAQAGYGQTQIASALKVHPFRVKLALGQAARFSEQELAKAIDELAAADYEVKSG
AMDRRLAVELLLMRWGGRQ

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921
- InterPro:   IPR010372
- InterPro:   IPR005790 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: NA

Molecular weight: Translated: 38123; Mature: 38123

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLERVWGNIEKQRFSPLYLLYGSESFLLQETYERLVKAALGEEEHEWNLAVYDCEETPVQ
CCCCHHCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHH
AALEEAETVPFFGERRVILIKHPYFFTAEKDKEIEHDLAKLEAYFKAPAPFSIVVFFAPY
HHHHHHCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCC
DKLDERKKITKLAKEHSEVVVAASLAEGELRAWVRRRIESQGAQISDEAIDALLRRAGTQ
HHHHHHHHHHHHHHHHCCEEEEEHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHH
LAALANEINKLALFAGPGGTVEAEAVEQLVARTPEENVFALVEQVAKRNIPAALQTFYDL
HHHHHHHHHHEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
LENNEEPIKILALLAGHFRLLAQVKWLAQAGYGQTQIASALKVHPFRVKLALGQAARFSE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCHHCCCH
QELAKAIDELAAADYEVKSGAMDRRLAVELLLMRWGGRQ
HHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLERVWGNIEKQRFSPLYLLYGSESFLLQETYERLVKAALGEEEHEWNLAVYDCEETPVQ
CCCCHHCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHH
AALEEAETVPFFGERRVILIKHPYFFTAEKDKEIEHDLAKLEAYFKAPAPFSIVVFFAPY
HHHHHHCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCC
DKLDERKKITKLAKEHSEVVVAASLAEGELRAWVRRRIESQGAQISDEAIDALLRRAGTQ
HHHHHHHHHHHHHHHHCCEEEEEHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHH
LAALANEINKLALFAGPGGTVEAEAVEQLVARTPEENVFALVEQVAKRNIPAALQTFYDL
HHHHHHHHHHEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
LENNEEPIKILALLAGHFRLLAQVKWLAQAGYGQTQIASALKVHPFRVKLALGQAARFSE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCHHCCCH
QELAKAIDELAAADYEVKSGAMDRRLAVELLLMRWGGRQ
HHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]