Definition | Geobacillus thermodenitrificans NG80-2 chromosome, complete genome. |
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Accession | NC_009328 |
Length | 3,550,319 |
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The map label for this gene is ponA [H]
Identifier: 138895746
GI number: 138895746
Start: 2233977
End: 2236679
Strand: Direct
Name: ponA [H]
Synonym: GTNG_2102
Alternate gene names: 138895746
Gene position: 2233977-2236679 (Clockwise)
Preceding gene: 138895745
Following gene: 138895765
Centisome position: 62.92
GC content: 51.46
Gene sequence:
>2703_bases ATGTCTGGTGAATATCGTTCTCGTGTGGAACGAAAGCAGGCAGAGAAACAGGCGAAACAAGCGAAACAAAAGAAGGCGAA AAAGAAAAAAGGACTATCGTGGTTGAAGACGATCGCCATTGCCATATTGCTTGTGATTTTTATCGGAGCGGCAAGCGGCG TGGCGGCGTTCGCCTATTTCGTCAAGGACGCTCCCCCGCTTGATGAGACGAAAATCAAAGACCCGCTCTCTTCAACCGTA TACGATATGAACGGAAAAAAAGTCGCCGAACTTGGCGGCCACAAACGAACGTACATTTCGTATAAAGACGTGCCGAAAGT GCTTGAAAATGCCGTGTTGGCAACCGAAGATGCCCGCTTTTATGAACATCACGGCATCGATGTTGTCCGCTTAGTCGGCG CCGTCGTCGCCAATTTTCAAGAAGGATTCGGGGCAGAAGGCGGCAGTACAATCACCCAACAAGTAGTGAAATTGTCGTTC CTGTCGCCGAAAAAAACGTTGGAGCGAAAGGCGCAAGAGGCGTGGCTCGCTCTGCAGCTTGAGCAAAAATATTCAAAGCA AGAAATTTTAGAAATGTACTTGAACAAAATTTATTATTCAGACGGCATTTACGGCGTTGCCCGGGCGGCAGAATATTACT TTGGCAAGACAAACTTAAAAGAGTTGACGCTTGTGGAAGCGGCGCTCTTAGCCGGTATGCCGCAAAGCCCGAACCGGTAC AATCCATATGACCATCCGGAGGCGGCGAAAAAACGGCGCGATACTGTTTTGTCGCTCATGGCGAAACACGGCTTCATCAG CCAAGAAGAGGCGGAAAAGGCGAAACAAGTGCCGATCCAATCGATGCTTACCGAACGGAAAAAACCGCAAAGCTCCGTGC CGTATGATGCCTTCATTGACGAAGTGATCAAAGAAGTGACTGACAAAGCGAACGTTAACGTCTTTGAAGACGGACTGAAA ATTTACACCACGCTTGATCAAGAAGCGCAGTCGCATGTCGAAAAACTATTAAACTCAGAGCAGTACTTCACCAATAAAAA AGACTTACAATCGGCTATCGCCCTCGTCGATACGAAAACAGGCGCCATTCGCGCTTTAGGCGGCGGGCGAAACCGCGATC ATGTCCAGTTCGGCTTTAACTACGCCATTCAGCCGGTCGGCCAGCCCGGTTCGGCGATTAAACCGATTTTAGACTACGGA CCGGCCATTGAATATTTAAAATGGTCAACTGCACACATTATCGTTGATGAACCGTACACGTATTCAGACGGCACACCGAT CCGCAACGCCGATCGGACATACAAAGGACCGGTGACGATGCGCTATGCGCTTACTTGGTCGCGTAACATCCCGGCGTTAA AAGCGTTCCAAGCGGTCGGCAAAGAGCGGGCGCAAGAATTTGCCAATCGGCTTGGCATGGGCTTTGATAAGGTAGAGGAA GCGTACTCGATCGGCGGTGTCGCACGCTATGTGTCGCCGCTGCAAATGGCCGGTGCCTACAGTGCCTTCGGCAACAACGG TTTGTATACCAAACCGTACGCGGTGACAAAAATCGTCTTCCCGGACGGCACGGAAATGGATTTAAAACCGAAGCCGAAAC GGGTTATGCAGGACTACACCGCTTACATGATCACAGATATGCTCAAATCGGTCGTCCGTTCTGGTACAGGGCAAAGCGCC AACGTTCCGGGGGTTGAGGTGGCCGGCAAAACGGGGACGACAAACTATGGCCCGTCCGGCGCCAAGTTTAATTTACCGGA GAGCGCTGTGCCGGACAGTTGGTTTGTCGGCTATACACCAAACTATACCGCCGCTGTTTGGACCGGTTTCAGCAAACGAA GCAGCACCGCAAATCTCAGCAAGGCGGAACAAAGAATTTCGCGTTCGCTCTTTAAAGCGCTCATCTCTCACATCGACGAC GGCAGTGGGAAATTCGAACAGCCGGACAGCGTGGTGAAAGTGCCGATTAAAAAAGGCACGAATCCACCGAAACTAGCAAG TAAACATACGCCGGCAAGCGAGATTACGTATGAACTGTTCGTGCGAGGCTCCCAACCGACAGAAGTAGCGAAAGACGAAC CAAAAGAGCTGCCATCGGTGAAAGGCTTAACCGCTTCGTATGACCAAGCTACCAATGCGATTTCTGTCACTTGGTCGTAC GATAAACAAACCGACAATACGCTCTTTGAAGTGCGCATCAAAGACGACCAAGGCCATACGGAAACTGTGACAACGAAAGA CCTGAAGATGACGATCGCGAACCCAACGCCAGGCGCTTCGTATACGATTGCCGTCTATGCGAAAGATGGCGAGCGGATGA GCAAACCAGCCATCACGAACGTCCGCATCCCTGGCGGTGAGCAAGGTGAAGGCCCGACAACGCCGGATGATGAGGAAAAT GGTGATGATGGCCGGAATGATGGACATAACGGGCAAGATGGCAACAGCGGAAATAACAACAATGGAAACAACGGCCAAGG GCAACAGCCTGAGCAACAGCCTGGGCAACAGCCTGGGCAACAACCTGGACAACAACCTGGACAACAGCCTGGGCAACAGC CTGGGCAACAACCTGGACAACAACCTGGACAACAACCTGGACAACAGCCTGGGCAACAACCTGGACAACAGCCTGGGCAA CAACCTGGACAACGGCAAGGACAACAGCAAGGGCAGCAGCAAGGACAACAACTAGGGCAATAG
Upstream 100 bases:
>100_bases CCCACTTGGCTATCAGCCGAGAATTGATTATATTAGTGTAGTAGAAAAAGTGTACTTCACCGTATGAGGTGAAAACTTGT AAGAAAGGCAGGATTTGCTT
Downstream 100 bases:
>100_bases CCAGGACAATAGTAGTGCCTCTGCACTGACGACACCAACAACGCTGCCGAATACGAACGTCTCTGGCGCGAACGGTGAAA ACCGTCAATAACTCAACTAA
Product: penicillin-binding proteins 1A and 1B
Products: NA
Alternate protein names: PBP1; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 900; Mature: 899
Protein sequence:
>900_residues MSGEYRSRVERKQAEKQAKQAKQKKAKKKKGLSWLKTIAIAILLVIFIGAASGVAAFAYFVKDAPPLDETKIKDPLSSTV YDMNGKKVAELGGHKRTYISYKDVPKVLENAVLATEDARFYEHHGIDVVRLVGAVVANFQEGFGAEGGSTITQQVVKLSF LSPKKTLERKAQEAWLALQLEQKYSKQEILEMYLNKIYYSDGIYGVARAAEYYFGKTNLKELTLVEAALLAGMPQSPNRY NPYDHPEAAKKRRDTVLSLMAKHGFISQEEAEKAKQVPIQSMLTERKKPQSSVPYDAFIDEVIKEVTDKANVNVFEDGLK IYTTLDQEAQSHVEKLLNSEQYFTNKKDLQSAIALVDTKTGAIRALGGGRNRDHVQFGFNYAIQPVGQPGSAIKPILDYG PAIEYLKWSTAHIIVDEPYTYSDGTPIRNADRTYKGPVTMRYALTWSRNIPALKAFQAVGKERAQEFANRLGMGFDKVEE AYSIGGVARYVSPLQMAGAYSAFGNNGLYTKPYAVTKIVFPDGTEMDLKPKPKRVMQDYTAYMITDMLKSVVRSGTGQSA NVPGVEVAGKTGTTNYGPSGAKFNLPESAVPDSWFVGYTPNYTAAVWTGFSKRSSTANLSKAEQRISRSLFKALISHIDD GSGKFEQPDSVVKVPIKKGTNPPKLASKHTPASEITYELFVRGSQPTEVAKDEPKELPSVKGLTASYDQATNAISVTWSY DKQTDNTLFEVRIKDDQGHTETVTTKDLKMTIANPTPGASYTIAVYAKDGERMSKPAITNVRIPGGEQGEGPTTPDDEEN GDDGRNDGHNGQDGNSGNNNNGNNGQGQQPEQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQ QPGQRQGQQQGQQQGQQLGQ
Sequences:
>Translated_900_residues MSGEYRSRVERKQAEKQAKQAKQKKAKKKKGLSWLKTIAIAILLVIFIGAASGVAAFAYFVKDAPPLDETKIKDPLSSTV YDMNGKKVAELGGHKRTYISYKDVPKVLENAVLATEDARFYEHHGIDVVRLVGAVVANFQEGFGAEGGSTITQQVVKLSF LSPKKTLERKAQEAWLALQLEQKYSKQEILEMYLNKIYYSDGIYGVARAAEYYFGKTNLKELTLVEAALLAGMPQSPNRY NPYDHPEAAKKRRDTVLSLMAKHGFISQEEAEKAKQVPIQSMLTERKKPQSSVPYDAFIDEVIKEVTDKANVNVFEDGLK IYTTLDQEAQSHVEKLLNSEQYFTNKKDLQSAIALVDTKTGAIRALGGGRNRDHVQFGFNYAIQPVGQPGSAIKPILDYG PAIEYLKWSTAHIIVDEPYTYSDGTPIRNADRTYKGPVTMRYALTWSRNIPALKAFQAVGKERAQEFANRLGMGFDKVEE AYSIGGVARYVSPLQMAGAYSAFGNNGLYTKPYAVTKIVFPDGTEMDLKPKPKRVMQDYTAYMITDMLKSVVRSGTGQSA NVPGVEVAGKTGTTNYGPSGAKFNLPESAVPDSWFVGYTPNYTAAVWTGFSKRSSTANLSKAEQRISRSLFKALISHIDD GSGKFEQPDSVVKVPIKKGTNPPKLASKHTPASEITYELFVRGSQPTEVAKDEPKELPSVKGLTASYDQATNAISVTWSY DKQTDNTLFEVRIKDDQGHTETVTTKDLKMTIANPTPGASYTIAVYAKDGERMSKPAITNVRIPGGEQGEGPTTPDDEEN GDDGRNDGHNGQDGNSGNNNNGNNGQGQQPEQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQ QPGQRQGQQQGQQQGQQLGQ >Mature_899_residues SGEYRSRVERKQAEKQAKQAKQKKAKKKKGLSWLKTIAIAILLVIFIGAASGVAAFAYFVKDAPPLDETKIKDPLSSTVY DMNGKKVAELGGHKRTYISYKDVPKVLENAVLATEDARFYEHHGIDVVRLVGAVVANFQEGFGAEGGSTITQQVVKLSFL SPKKTLERKAQEAWLALQLEQKYSKQEILEMYLNKIYYSDGIYGVARAAEYYFGKTNLKELTLVEAALLAGMPQSPNRYN PYDHPEAAKKRRDTVLSLMAKHGFISQEEAEKAKQVPIQSMLTERKKPQSSVPYDAFIDEVIKEVTDKANVNVFEDGLKI YTTLDQEAQSHVEKLLNSEQYFTNKKDLQSAIALVDTKTGAIRALGGGRNRDHVQFGFNYAIQPVGQPGSAIKPILDYGP AIEYLKWSTAHIIVDEPYTYSDGTPIRNADRTYKGPVTMRYALTWSRNIPALKAFQAVGKERAQEFANRLGMGFDKVEEA YSIGGVARYVSPLQMAGAYSAFGNNGLYTKPYAVTKIVFPDGTEMDLKPKPKRVMQDYTAYMITDMLKSVVRSGTGQSAN VPGVEVAGKTGTTNYGPSGAKFNLPESAVPDSWFVGYTPNYTAAVWTGFSKRSSTANLSKAEQRISRSLFKALISHIDDG SGKFEQPDSVVKVPIKKGTNPPKLASKHTPASEITYELFVRGSQPTEVAKDEPKELPSVKGLTASYDQATNAISVTWSYD KQTDNTLFEVRIKDDQGHTETVTTKDLKMTIANPTPGASYTIAVYAKDGERMSKPAITNVRIPGGEQGEGPTTPDDEENG DDGRNDGHNGQDGNSGNNNNGNNGQGQQPEQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQ PGQRQGQQQGQQQGQQLGQ
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein. Note=Probably found all over the whole cell at low concentrations. Also localizes to the division site in vegetative cells [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=546, Percent_Identity=32.4175824175824, Blast_Score=207, Evalue=3e-54, Organism=Escherichia coli, GI87082258, Length=302, Percent_Identity=35.0993377483444, Blast_Score=197, Evalue=2e-51, Organism=Escherichia coli, GI1788867, Length=538, Percent_Identity=29.368029739777, Blast_Score=166, Evalue=5e-42, Organism=Escherichia coli, GI1789601, Length=245, Percent_Identity=30.6122448979592, Blast_Score=95, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001264 - InterPro: IPR013783 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00041 fn3; PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.- [C]
Molecular weight: Translated: 98616; Mature: 98484
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGEYRSRVERKQAEKQAKQAKQKKAKKKKGLSWLKTIAIAILLVIFIGAASGVAAFAYF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKDAPPLDETKIKDPLSSTVYDMNGKKVAELGGHKRTYISYKDVPKVLENAVLATEDARF HHCCCCCCHHHHCCCHHHHEECCCCCCHHHCCCCCEEEECHHHHHHHHHHHHHCCCCHHH YEHHGIDVVRLVGAVVANFQEGFGAEGGSTITQQVVKLSFLSPKKTLERKAQEAWLALQL HHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH EQKYSKQEILEMYLNKIYYSDGIYGVARAAEYYFGKTNLKELTLVEAALLAGMPQSPNRY HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC NPYDHPEAAKKRRDTVLSLMAKHGFISQEEAEKAKQVPIQSMLTERKKPQSSVPYDAFID CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHH EVIKEVTDKANVNVFEDGLKIYTTLDQEAQSHVEKLLNSEQYFTNKKDLQSAIALVDTKT HHHHHHHCCCCCEEECCCEEEEEHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCC GAIRALGGGRNRDHVQFGFNYAIQPVGQPGSAIKPILDYGPAIEYLKWSTAHIIVDEPYT CCEEECCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHCCCHHHHHCCCCEEEEECCCEE YSDGTPIRNADRTYKGPVTMRYALTWSRNIPALKAFQAVGKERAQEFANRLGMGFDKVEE CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AYSIGGVARYVSPLQMAGAYSAFGNNGLYTKPYAVTKIVFPDGTEMDLKPKPKRVMQDYT HHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHHHHHH AYMITDMLKSVVRSGTGQSANVPGVEVAGKTGTTNYGPSGAKFNLPESAVPDSWFVGYTP HHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC NYTAAVWTGFSKRSSTANLSKAEQRISRSLFKALISHIDDGSGKFEQPDSVVKVPIKKGT CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHCCC NPPKLASKHTPASEITYELFVRGSQPTEVAKDEPKELPSVKGLTASYDQATNAISVTWSY CCCCCCCCCCCHHHCEEEEEEECCCCCHHHCCCHHHCCCCCCCCCCHHHCCCEEEEEEEC DKQTDNTLFEVRIKDDQGHTETVTTKDLKMTIANPTPGASYTIAVYAKDGERMSKPAITN CCCCCCEEEEEEEECCCCCCCEEEECCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCE VRIPGGEQGEGPTTPDDEENGDDGRNDGHNGQDGNSGNNNNGNNGQGQQPEQQPGQQPGQ EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQRQGQQQGQQQGQQLGQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SGEYRSRVERKQAEKQAKQAKQKKAKKKKGLSWLKTIAIAILLVIFIGAASGVAAFAYF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKDAPPLDETKIKDPLSSTVYDMNGKKVAELGGHKRTYISYKDVPKVLENAVLATEDARF HHCCCCCCHHHHCCCHHHHEECCCCCCHHHCCCCCEEEECHHHHHHHHHHHHHCCCCHHH YEHHGIDVVRLVGAVVANFQEGFGAEGGSTITQQVVKLSFLSPKKTLERKAQEAWLALQL HHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH EQKYSKQEILEMYLNKIYYSDGIYGVARAAEYYFGKTNLKELTLVEAALLAGMPQSPNRY HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC NPYDHPEAAKKRRDTVLSLMAKHGFISQEEAEKAKQVPIQSMLTERKKPQSSVPYDAFID CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHH EVIKEVTDKANVNVFEDGLKIYTTLDQEAQSHVEKLLNSEQYFTNKKDLQSAIALVDTKT HHHHHHHCCCCCEEECCCEEEEEHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCC GAIRALGGGRNRDHVQFGFNYAIQPVGQPGSAIKPILDYGPAIEYLKWSTAHIIVDEPYT CCEEECCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHCCCHHHHHCCCCEEEEECCCEE YSDGTPIRNADRTYKGPVTMRYALTWSRNIPALKAFQAVGKERAQEFANRLGMGFDKVEE CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AYSIGGVARYVSPLQMAGAYSAFGNNGLYTKPYAVTKIVFPDGTEMDLKPKPKRVMQDYT HHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHHHHHH AYMITDMLKSVVRSGTGQSANVPGVEVAGKTGTTNYGPSGAKFNLPESAVPDSWFVGYTP HHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC NYTAAVWTGFSKRSSTANLSKAEQRISRSLFKALISHIDDGSGKFEQPDSVVKVPIKKGT CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHCCC NPPKLASKHTPASEITYELFVRGSQPTEVAKDEPKELPSVKGLTASYDQATNAISVTWSY CCCCCCCCCCCHHHCEEEEEEECCCCCHHHCCCHHHCCCCCCCCCCHHHCCCEEEEEEEC DKQTDNTLFEVRIKDDQGHTETVTTKDLKMTIANPTPGASYTIAVYAKDGERMSKPAITN CCCCCCEEEEEEEECCCCCCCEEEECCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCE VRIPGGEQGEGPTTPDDEENGDDGRNDGHNGQDGNSGNNNNGNNGQGQQPEQQPGQQPGQ EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQQPGQRQGQQQGQQQGQQLGQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7814321; 8760912; 9384377; 9721295; 10322023 [H]