Click here to switch to the map view.

The map label for this gene is tnpB

Identifier: 138895717

GI number: 138895717

Start: 2203078

End: 2203587

Strand: Direct

Name: tnpB

Synonym: GTNG_2073

Alternate gene names: NA

Gene position: 2203078-2203587 (Clockwise)

Preceding gene: 138895716

Following gene: 138895725

Centisome position: 62.05

GC content: 37.84

Gene sequence:

>510_bases
ATGAGTATTCAACAGCACCATATCCATGATGAATTAGGCTTTCATGAACGATTACAGCAAGAGTTATCGACCTATACAGA
AAAAATCATTCACGAAGATGGCTCGGTCACAACCAATGTTGTGCAAAATCCTTACTTCTTAGTCAACGATACATGGAATG
TCAATGTAATTGGAACGATTCCTAACTTCAAAGAACAATTTTCAAATTATAAGCAAAGAGCTAAAAATATTCGATTTGAA
GTGAAAAGTCCATCCGTTAACTTGGAAATCAAGTATGTGTGGTACAACAAGTTATTTCGGGATGAATGGACTTTAACGAG
TGCTTTTGTAGGACAAACCTCACACCTTAGAAAATTGACAGCTTTCCTGAATGAAAAGTACCCTTCTTTGCATTCCCTTC
TTGATTTGGAGATTGAGAAAGCAGAACGGGAATGGATGTTTTGGTTGTCTGAAAACGGGGTTCAAACACAATCCACTCAA
CAACATATCCCCGAGTTCGACAGTCACTAG

Upstream 100 bases:

>100_bases
ACTTGTACCTCCATCCTTCGGATGAAGAAATTCGTGAGAATTGGGAAAAGGCTCAACATGCGTTTCATATCACAAAAAAA
TCTGGAAAGGATTCTGGAGA

Downstream 100 bases:

>100_bases
GCAAACAAAATGCCTCTCGCCCCTTGATACAAAAGGGATCGGAGGCATTTGGGCACACTTCGGGCGTGTATCTAGGTGCG
AGGGTGGATGCCTAGAATCT

Product: transposition regulatory protein TnpB

Products: NA

Alternate protein names: Integrase Family Protein

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTIPNFKEQFSNYKQRAKNIRFE
VKSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLTAFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQ
QHIPEFDSH

Sequences:

>Translated_169_residues
MSIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTIPNFKEQFSNYKQRAKNIRFE
VKSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLTAFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQ
QHIPEFDSH
>Mature_168_residues
SIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTIPNFKEQFSNYKQRAKNIRFEV
KSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLTAFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQQ
HIPEFDSH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20099; Mature: 19967

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTI
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCEEEEEEECC
PNFKEQFSNYKQRAKNIRFEVKSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLT
CCHHHHHHHHHHHHHCCEEEEECCCEEEEEEEEEECHHHHCCHHHHHHHHCCHHHHHHHH
AFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQQHIPEFDSH
HHHHCCCCHHHHHHHHHHHHCCHHEEEEECCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
SIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTI
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCEEEEEEECC
PNFKEQFSNYKQRAKNIRFEVKSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLT
CCHHHHHHHHHHHHHCCEEEEECCCEEEEEEEEEECHHHHCCHHHHHHHHCCHHHHHHHH
AFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQQHIPEFDSH
HHHHCCCCHHHHHHHHHHHHCCHHEEEEECCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA