Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 138895711

GI number: 138895711

Start: 2196798

End: 2197712

Strand: Direct

Name: xerC [H]

Synonym: GTNG_2067

Alternate gene names: 138895711

Gene position: 2196798-2197712 (Clockwise)

Preceding gene: 138895710

Following gene: 138895713

Centisome position: 61.88

GC content: 46.45

Gene sequence:

>915_bases
ATGCTCAACGAATATGTGGACTATCTTCGGGAAAAAGGGGCTTCCCCAAACACAATCATCTCTTACACGAATGACTTGAA
TATCTTTTTTAACGACTTACATATCCGCCCAAGCGATTACGTCACGTCGGCTGACATCCGCAAATGGATCCAGCAAATGT
TGAATCCAATAGAAGGGAAACCGTTGGCCATATCCACGATCAATCGCCGGCTCAATTCGCTGCGAAGCTTTTATGCGTGG
GCGGTCGAACATCATAAGATCGAACAAAACCCAATGAAAGACATACAGGATTTAAAATCAGCCGATGAAGACTATGAAAA
AATTATGTGGTTGACGGAAGAAGAATTCGAGGACTTATTGCATCGAATGCGGAAAAAACCGGTTCGTAGCAGAGGAGTTG
ATCCAGAGGAAAAGTATCGGCGGGACCGTGCGGTGGTGTACCTACTTACCTATGCAGGATTGCGAGTGGAAGAGTTATCA
AATTTAAAATTAACGGACTTAGATTTAGAGATGAAACGAATTCGGATCGTGGGAAAAGGGATGAAGGTAAGAACGGTGCC
GATCTCGAACATCTTACTGGCGGAACTGGAGGATTGGCTCGAGTTTCGCGCGGAAATGGCAAAAAAGAAGCCGCATGTGG
CCGCATCGCCATACGTCTTTTACAGCCAACGTTCTCCGAAATTTTCGGTACGGGGCATCCAGCGAATGATCGAAAGCTAC
AGCCTGCCGAATAAAAAACTTACGCCTCATATGTTCCGACATACGTTTTGTAAGTGGATGCTAAAGGCGACGAACAACGA
TATCGAGAAAGTGCGGCGGCTTGCCGGCCACAGCAATATCGCCACGACGTCCAGATACTTAAAAGACAGCTATAGTGATT
TGGCGGATGCCGTGGAGGCGTTGCCGAAGTTTTAA

Upstream 100 bases:

>100_bases
TCTCGTTTATGTTATACTCGTCATATAATATTATTTTTTAAATTAATTATCCTCTTTTTGAACCTTTCCAAACTAGACGT
ATAAGTGAAAGGGTGGAACG

Downstream 100 bases:

>100_bases
AATAACGCTAATTCATTCATTAATTATGCATCAAAATTAAAAAAAGCGCTAAGGGAGCTTTTATTTTCTTCCTTAGCGCT
TTTTTATTGACTACTTATTT

Product: putative integrase/recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLNEYVDYLREKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKWIQQMLNPIEGKPLAISTINRRLNSLRSFYAW
AVEHHKIEQNPMKDIQDLKSADEDYEKIMWLTEEEFEDLLHRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELS
NLKLTDLDLEMKRIRIVGKGMKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY
SLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEALPKF

Sequences:

>Translated_304_residues
MLNEYVDYLREKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKWIQQMLNPIEGKPLAISTINRRLNSLRSFYAW
AVEHHKIEQNPMKDIQDLKSADEDYEKIMWLTEEEFEDLLHRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELS
NLKLTDLDLEMKRIRIVGKGMKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY
SLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEALPKF
>Mature_304_residues
MLNEYVDYLREKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKWIQQMLNPIEGKPLAISTINRRLNSLRSFYAW
AVEHHKIEQNPMKDIQDLKSADEDYEKIMWLTEEEFEDLLHRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELS
NLKLTDLDLEMKRIRIVGKGMKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY
SLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEALPKF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=312, Percent_Identity=26.2820512820513, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789261, Length=295, Percent_Identity=26.7796610169492, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35762; Mature: 35762

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNEYVDYLREKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKWIQQMLNPIEGK
CCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEECCCHHCCHHHHHHHHHHHHCCCCCC
PLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDYEKIMWLTEEEFEDLL
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHH
HRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG
HHHHHCCHHHCCCCHHHHHHHHHHEEEEEHHCCCCHHHHCCCEEECCCHHHHHHHHEECC
MKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY
CEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
SLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LPKF
HCCC
>Mature Secondary Structure
MLNEYVDYLREKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKWIQQMLNPIEGK
CCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEECCCHHCCHHHHHHHHHHHHCCCCCC
PLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDYEKIMWLTEEEFEDLL
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHH
HRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG
HHHHHCCHHHCCCCHHHHHHHHHHEEEEEHHCCCCHHHHCCCEEECCCHHHHHHHHEECC
MKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY
CEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
SLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LPKF
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA