Click here to switch to the map view.

The map label for this gene is xynB2 [H]

Identifier: 138895431

GI number: 138895431

Start: 1879224

End: 1881341

Strand: Reverse

Name: xynB2 [H]

Synonym: GTNG_1775

Alternate gene names: 138895431

Gene position: 1881341-1879224 (Counterclockwise)

Preceding gene: 138895432

Following gene: 138895430

Centisome position: 52.99

GC content: 47.88

Gene sequence:

>2118_bases
ATGCCAAACAATCTATTTTTTAACGCCCACCATTCACCGGTTGGAGCGTTTTCCAGCTTCACATTAGGGTTTCCGGGAAA
AAGCGGGGGATTGGATCTCGAACTCGCCCGTCCACCGCGGCAAAACGTATTTATTGGCGTAGAATCGTTACATGAATCGG
GATTATATCACGTTCTACCATTTTGGGAGACATCGGGAGAAGATGAAAGTAAACGGTATGACATTGAAAATCCCGACCCG
AATCCGCAAAAACCGAACATTTTAATCCCGTTTGCCAAAGAGGAGATTCAACGCGAATTTCATGTGGCAACAGATACATG
GAAGGCTGGAGATTTAACGTTTACGATTTATTCTCCTGTAAAAGCGGTGCCAGATCCGGAAACCACGGACGAGGAAGAAC
TCAAGCTGGCGTTGGTTCCAGCTGTAATCGTTGAGATGACGATTGATAATACAAATGGAACGAGAGCACGGCGGGCGTTT
TTCGGGTTCGAAGGCACCGATCCGTATACTTCGATGCGGCGAATCGATGAGACATGCCCGCAACTGTGCGGAGTTGGGCA
AGGGCGAATTGTTGGCATCGTTTCCAAAGACGAGGATGTTCGCTCCGCGTTGCATTTTAGCATGGAAGATATTTTAACGG
CGCAGCTCGAAGAAAATTGGACGTTCGGGCTTGGAAAAGTCGGTGCGTTAATTGTCGATGTTCCGGCGGGTGAAAAGAAA
ACGCATCAGTTTGCTGTTTGTTTTTATCGTGGCGGTTACGTGACAGCGGGAATGGATACTTCTTATTTCTATACTCGTTT
CTTTAATAATATTGAGGAAGTCGGCCTTTATGCGTTAGAGAAGGCAGAAGTGCTGAAGGAGCAATCGTTTCGTTCGAACG
AACTCATTGAAAAAGAATGGCTCTCCGATGATCAAAAGTTTATGATGGCGCATGCCATTCGCAGTTATTACGGCAATACA
CAGCTGCTTGAGCATGAAGGAAAGCCGATTTGGGTTGTCAACGAAGGCGAGTACCGCATGATGAATACGTTTGATTTGAC
CGTCGACCAACTGTTTTTTGAGTTGAAGATGAATCCATGGACGGTGAAAAATGTCCTTGACTTATATGTCGAACGCTATA
GTTACGAGGATGGTGTTCGTTTTCCGGGAGAAGAGACAGAATATCCGGGTGGCATCAGTTTTACTCATGACATGGGAGTA
GCGAATACGTTCTTGCGCCCGCACCACTCGTCATACGAGCTATATGGCCTTAGCGGTTGCTTCTCGCATATGACGCACGA
ACAGCTCGTCAACTGGGTGCTTTGCGCTGCGGTGTACATTGAACAAACCAAAGACTGGGCATGGCGCGACAAGCGGCTTG
CCATCTTAGAACAGTGTCTAGAAAGCATGGTTCGCCGCGATCATCCCGATCCGGAAAAACGGAATGGCATTATGGGATTG
GATAGTACTCGCACGATGGGCGGAGCGGAAATTACGACGTATGACAGTTTGGACGTTTCCCTCGGCCAAGCCCGCAACAA
TTTATATTTAGCAGGTAAATGTTGGGCAGCCTATGTAGCGCTTGAGAAATTATTCCATGATGTCGGCAAGGAAGAATTGG
CCGCGCTGGCGGGAGAGCAGGCAGAAAAATGTGCGGCGACAATCGTCAGCTATGTGACTGATGATGGGTACATCCCGGCT
GTCATGGGAGAAGGAAACGACTCCAAAATCATCCCAGCTATCGAGGGGCTTGTGTTCCCTTATTTCACTAATTGTCATGA
GGCGTTAAACAAAGACGGCCGCTTCGGAGAATATATTCAAGCCTTGAACGCTCATTTGCGTTATGTGCTTCGGGAAGGAA
TTTGTTTGTTCCCGGATGGAGGATGGAAGATTTCCTCAACGAGCAACAACTCGTGGCTGAGCAAAATTTACTTATGCCAG
TTTATCGCCCGCCATCTGTTAGGTTGGGAGTGGGACGAACAAGGCAAACGGGCCGATGCTGCCCATGTTGCATGGCTTAC
TCATCCAACGCTTTCGATTTGGAGTTGGAGTGACCAAATCATCGCTGGTGAAATTAAAGCCAGCAAATATTATCCGCGCG
GCGTGACAAGCATTTTATGGCTTGAGGAGGGGGAATGA

Upstream 100 bases:

>100_bases
TGATCCCTCTACCAAATTAACATTCTATCGATTGCTATTAAAATGATGCTGTTTGCGTGATAAAAGGATAAAGAGGAGAA
AAGGAGAGAGAAAAATGATT

Downstream 100 bases:

>100_bases
GCGTGAGTCAATCGCTCCCCTCCCTCCGTGAAGTATTTGCGAATGACTTTCGCATTGGAGCGGCAGTTAATCCGGTGACC
ATTGAATCACAAAAACAGCT

Product: B-xylosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MPNNLFFNAHHSPVGAFSSFTLGFPGKSGGLDLELARPPRQNVFIGVESLHESGLYHVLPFWETSGEDESKRYDIENPDP
NPQKPNILIPFAKEEIQREFHVATDTWKAGDLTFTIYSPVKAVPDPETTDEEELKLALVPAVIVEMTIDNTNGTRARRAF
FGFEGTDPYTSMRRIDETCPQLCGVGQGRIVGIVSKDEDVRSALHFSMEDILTAQLEENWTFGLGKVGALIVDVPAGEKK
THQFAVCFYRGGYVTAGMDTSYFYTRFFNNIEEVGLYALEKAEVLKEQSFRSNELIEKEWLSDDQKFMMAHAIRSYYGNT
QLLEHEGKPIWVVNEGEYRMMNTFDLTVDQLFFELKMNPWTVKNVLDLYVERYSYEDGVRFPGEETEYPGGISFTHDMGV
ANTFLRPHHSSYELYGLSGCFSHMTHEQLVNWVLCAAVYIEQTKDWAWRDKRLAILEQCLESMVRRDHPDPEKRNGIMGL
DSTRTMGGAEITTYDSLDVSLGQARNNLYLAGKCWAAYVALEKLFHDVGKEELAALAGEQAEKCAATIVSYVTDDGYIPA
VMGEGNDSKIIPAIEGLVFPYFTNCHEALNKDGRFGEYIQALNAHLRYVLREGICLFPDGGWKISSTSNNSWLSKIYLCQ
FIARHLLGWEWDEQGKRADAAHVAWLTHPTLSIWSWSDQIIAGEIKASKYYPRGVTSILWLEEGE

Sequences:

>Translated_705_residues
MPNNLFFNAHHSPVGAFSSFTLGFPGKSGGLDLELARPPRQNVFIGVESLHESGLYHVLPFWETSGEDESKRYDIENPDP
NPQKPNILIPFAKEEIQREFHVATDTWKAGDLTFTIYSPVKAVPDPETTDEEELKLALVPAVIVEMTIDNTNGTRARRAF
FGFEGTDPYTSMRRIDETCPQLCGVGQGRIVGIVSKDEDVRSALHFSMEDILTAQLEENWTFGLGKVGALIVDVPAGEKK
THQFAVCFYRGGYVTAGMDTSYFYTRFFNNIEEVGLYALEKAEVLKEQSFRSNELIEKEWLSDDQKFMMAHAIRSYYGNT
QLLEHEGKPIWVVNEGEYRMMNTFDLTVDQLFFELKMNPWTVKNVLDLYVERYSYEDGVRFPGEETEYPGGISFTHDMGV
ANTFLRPHHSSYELYGLSGCFSHMTHEQLVNWVLCAAVYIEQTKDWAWRDKRLAILEQCLESMVRRDHPDPEKRNGIMGL
DSTRTMGGAEITTYDSLDVSLGQARNNLYLAGKCWAAYVALEKLFHDVGKEELAALAGEQAEKCAATIVSYVTDDGYIPA
VMGEGNDSKIIPAIEGLVFPYFTNCHEALNKDGRFGEYIQALNAHLRYVLREGICLFPDGGWKISSTSNNSWLSKIYLCQ
FIARHLLGWEWDEQGKRADAAHVAWLTHPTLSIWSWSDQIIAGEIKASKYYPRGVTSILWLEEGE
>Mature_704_residues
PNNLFFNAHHSPVGAFSSFTLGFPGKSGGLDLELARPPRQNVFIGVESLHESGLYHVLPFWETSGEDESKRYDIENPDPN
PQKPNILIPFAKEEIQREFHVATDTWKAGDLTFTIYSPVKAVPDPETTDEEELKLALVPAVIVEMTIDNTNGTRARRAFF
GFEGTDPYTSMRRIDETCPQLCGVGQGRIVGIVSKDEDVRSALHFSMEDILTAQLEENWTFGLGKVGALIVDVPAGEKKT
HQFAVCFYRGGYVTAGMDTSYFYTRFFNNIEEVGLYALEKAEVLKEQSFRSNELIEKEWLSDDQKFMMAHAIRSYYGNTQ
LLEHEGKPIWVVNEGEYRMMNTFDLTVDQLFFELKMNPWTVKNVLDLYVERYSYEDGVRFPGEETEYPGGISFTHDMGVA
NTFLRPHHSSYELYGLSGCFSHMTHEQLVNWVLCAAVYIEQTKDWAWRDKRLAILEQCLESMVRRDHPDPEKRNGIMGLD
STRTMGGAEITTYDSLDVSLGQARNNLYLAGKCWAAYVALEKLFHDVGKEELAALAGEQAEKCAATIVSYVTDDGYIPAV
MGEGNDSKIIPAIEGLVFPYFTNCHEALNKDGRFGEYIQALNAHLRYVLREGICLFPDGGWKISSTSNNSWLSKIYLCQF
IARHLLGWEWDEQGKRADAAHVAWLTHPTLSIWSWSDQIIAGEIKASKYYPRGVTSILWLEEGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 52 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR000852 [H]

Pfam domain/function: PF03512 Glyco_hydro_52 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 79877; Mature: 79746

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNNLFFNAHHSPVGAFSSFTLGFPGKSGGLDLELARPPRQNVFIGVESLHESGLYHVLP
CCCCEEEECCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCEEEEHHHHHHCCCEEEEE
FWETSGEDESKRYDIENPDPNPQKPNILIPFAKEEIQREFHVATDTWKAGDLTFTIYSPV
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHEEECCCCCCCCEEEEEECCC
KAVPDPETTDEEELKLALVPAVIVEMTIDNTNGTRARRAFFGFEGTDPYTSMRRIDETCP
CCCCCCCCCCHHHEEEEEEEEEEEEEEEECCCCCCHHHEEECCCCCCHHHHHHHHHHHHH
QLCGVGQGRIVGIVSKDEDVRSALHFSMEDILTAQLEENWTFGLGKVGALIVDVPAGEKK
HHHCCCCCCEEEEECCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
THQFAVCFYRGGYVTAGMDTSYFYTRFFNNIEEVGLYALEKAEVLKEQSFRSNELIEKEW
CCEEEEEEEECCEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LSDDQKFMMAHAIRSYYGNTQLLEHEGKPIWVVNEGEYRMMNTFDLTVDQLFFELKMNPW
CCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCEEEEEEEHHHHHHHHHHHCCCCC
TVKNVLDLYVERYSYEDGVRFPGEETEYPGGISFTHDMGVANTFLRPHHSSYELYGLSGC
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCEEEEEHHHH
FSHMTHEQLVNWVLCAAVYIEQTKDWAWRDKRLAILEQCLESMVRRDHPDPEKRNGIMGL
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCC
DSTRTMGGAEITTYDSLDVSLGQARNNLYLAGKCWAAYVALEKLFHDVGKEELAALAGEQ
CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHCHH
AEKCAATIVSYVTDDGYIPAVMGEGNDSKIIPAIEGLVFPYFTNCHEALNKDGRFGEYIQ
HHHHHHHHHHHHCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALNAHLRYVLREGICLFPDGGWKISSTSNNSWLSKIYLCQFIARHLLGWEWDEQGKRADA
HHHHHHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
AHVAWLTHPTLSIWSWSDQIIAGEIKASKYYPRGVTSILWLEEGE
CEEEEEECCCEEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
PNNLFFNAHHSPVGAFSSFTLGFPGKSGGLDLELARPPRQNVFIGVESLHESGLYHVLP
CCCEEEECCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCEEEEHHHHHHCCCEEEEE
FWETSGEDESKRYDIENPDPNPQKPNILIPFAKEEIQREFHVATDTWKAGDLTFTIYSPV
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHEEECCCCCCCCEEEEEECCC
KAVPDPETTDEEELKLALVPAVIVEMTIDNTNGTRARRAFFGFEGTDPYTSMRRIDETCP
CCCCCCCCCCHHHEEEEEEEEEEEEEEEECCCCCCHHHEEECCCCCCHHHHHHHHHHHHH
QLCGVGQGRIVGIVSKDEDVRSALHFSMEDILTAQLEENWTFGLGKVGALIVDVPAGEKK
HHHCCCCCCEEEEECCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
THQFAVCFYRGGYVTAGMDTSYFYTRFFNNIEEVGLYALEKAEVLKEQSFRSNELIEKEW
CCEEEEEEEECCEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LSDDQKFMMAHAIRSYYGNTQLLEHEGKPIWVVNEGEYRMMNTFDLTVDQLFFELKMNPW
CCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCEEEEEEEHHHHHHHHHHHCCCCC
TVKNVLDLYVERYSYEDGVRFPGEETEYPGGISFTHDMGVANTFLRPHHSSYELYGLSGC
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCEEEEEHHHH
FSHMTHEQLVNWVLCAAVYIEQTKDWAWRDKRLAILEQCLESMVRRDHPDPEKRNGIMGL
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCC
DSTRTMGGAEITTYDSLDVSLGQARNNLYLAGKCWAAYVALEKLFHDVGKEELAALAGEQ
CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHCHH
AEKCAATIVSYVTDDGYIPAVMGEGNDSKIIPAIEGLVFPYFTNCHEALNKDGRFGEYIQ
HHHHHHHHHHHHCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALNAHLRYVLREGICLFPDGGWKISSTSNNSWLSKIYLCQFIARHLLGWEWDEQGKRADA
HHHHHHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
AHVAWLTHPTLSIWSWSDQIIAGEIKASKYYPRGVTSILWLEEGE
CEEEEEECCCEEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8074507 [H]