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The map label for this gene is xynA2 [H]

Identifier: 138895430

GI number: 138895430

Start: 1878226

End: 1879227

Strand: Reverse

Name: xynA2 [H]

Synonym: GTNG_1774

Alternate gene names: 138895430

Gene position: 1879227-1878226 (Counterclockwise)

Preceding gene: 138895431

Following gene: 138895429

Centisome position: 52.93

GC content: 48.2

Gene sequence:

>1002_bases
ATGAGCGTGAGTCAATCGCTCCCCTCCCTCCGTGAAGTATTTGCGAATGACTTTCGCATTGGAGCGGCAGTTAATCCGGT
GACCATTGAATCACAAAAACAGCTGTTGATTAGCCACGTCAACAGCCTTACAGCCGAAAACCATATGAAGTTCGAACACC
TTCAGCCGGAAGAAGGGCGGTTCACGTTTGACATCGCCGATCGAATCGTCGATTTCGCTCGTTCCCATCACATGGCGGTT
CGCGGGCATACGCTCGTATGGCATAACCAAACGCCGGATTGGGTGTTTCAGGATGGTCAAGGTCATTTCATCAGCAGGGA
TGTGTTGCTTGAGCGGATGAAGTCCCACATTTCTGCAGTTGTACGGCGGTACAAGGGGAAAGTGTATTGCTGGGATGTGG
TCAACGAAGCGGTGGCTGACGAGGGGAGCGAATGGTTGCGTTCATCGAAGTGGCGCCAAATCATTGGGGACGATTTTATT
GAACAGGCGTTTCTCTGTGCTCATGAAGCCGACCCAGACGCGTTGTTGTTTTACAATGATTATAATGAATGTTTTCCGAA
AAAACGCGAGAAGATCTATACACTAGTTAAATCTTTGCGAGACAAAGGGATTCCCATTCACGGCATCGGTATGCAGGCGC
ATTGGAGCCTGACGCGCCCGTCATTGGACGAAATTCGAGCAGCCATTGAACGATATGCGTCTCTCGATGTGGTTCTTCAC
ATTACGGAGCTTGATGTATCTATGTTTGAATTTCACGACCATCGCAAGGACTTAGCTGCCCCTACAAACGAAATGATCGA
ACGACAGGCAGAGCGGTACGAACAAATTTTCACTCTATTCAAGGAGTATCGTGACGTAATTGAAAGTGTAACATTTTGGG
GAATGGCCGATGACTATACGTGGCTCGATCACTTTCCGGTGCAAGGGAGAAAAAACTGGCCATTTTTGTTTGATGAACAA
CACGAACCGAAGTCAGCTTTTTGGAGAGTGGCGAGTATCTAA

Upstream 100 bases:

>100_bases
CGATTTGGAGTTGGAGTGACCAAATCATCGCTGGTGAAATTAAAGCCAGCAAATATTATCCGCGCGGCGTGACAAGCATT
TTATGGCTTGAGGAGGGGGA

Downstream 100 bases:

>100_bases
CTTCTAGTTGCTTTGAAAGCATACTATATAGCGAAGAGGGGAGAAAATAGAGTTTAGTTCCCCTCTTCCATAATAATTAA
GGAACTTTCAGAAAAATGTT

Product: Intra-cellular xylanase

Products: NA

Alternate protein names: Xylanase; 1,4-beta-D-xylan xylanohydrolase [H]

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSVSQSLPSLREVFANDFRIGAAVNPVTIESQKQLLISHVNSLTAENHMKFEHLQPEEGRFTFDIADRIVDFARSHHMAV
RGHTLVWHNQTPDWVFQDGQGHFISRDVLLERMKSHISAVVRRYKGKVYCWDVVNEAVADEGSEWLRSSKWRQIIGDDFI
EQAFLCAHEADPDALLFYNDYNECFPKKREKIYTLVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLDVVLH
ITELDVSMFEFHDHRKDLAAPTNEMIERQAERYEQIFTLFKEYRDVIESVTFWGMADDYTWLDHFPVQGRKNWPFLFDEQ
HEPKSAFWRVASI

Sequences:

>Translated_333_residues
MSVSQSLPSLREVFANDFRIGAAVNPVTIESQKQLLISHVNSLTAENHMKFEHLQPEEGRFTFDIADRIVDFARSHHMAV
RGHTLVWHNQTPDWVFQDGQGHFISRDVLLERMKSHISAVVRRYKGKVYCWDVVNEAVADEGSEWLRSSKWRQIIGDDFI
EQAFLCAHEADPDALLFYNDYNECFPKKREKIYTLVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLDVVLH
ITELDVSMFEFHDHRKDLAAPTNEMIERQAERYEQIFTLFKEYRDVIESVTFWGMADDYTWLDHFPVQGRKNWPFLFDEQ
HEPKSAFWRVASI
>Mature_332_residues
SVSQSLPSLREVFANDFRIGAAVNPVTIESQKQLLISHVNSLTAENHMKFEHLQPEEGRFTFDIADRIVDFARSHHMAVR
GHTLVWHNQTPDWVFQDGQGHFISRDVLLERMKSHISAVVRRYKGKVYCWDVVNEAVADEGSEWLRSSKWRQIIGDDFIE
QAFLCAHEADPDALLFYNDYNECFPKKREKIYTLVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLDVVLHI
TELDVSMFEFHDHRKDLAAPTNEMIERQAERYEQIFTLFKEYRDVIESVTFWGMADDYTWLDHFPVQGRKNWPFLFDEQH
EPKSAFWRVASI

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family. Cytoplasmic xylanase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 39027; Mature: 38896

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSQSLPSLREVFANDFRIGAAVNPVTIESQKQLLISHVNSLTAENHMKFEHLQPEEGR
CCCHHCCHHHHHHHHCCCEECCCCCCEEECHHHHHHHHHHHHHHHHCCCCHHCCCCCCCC
FTFDIADRIVDFARSHHMAVRGHTLVWHNQTPDWVFQDGQGHFISRDVLLERMKSHISAV
EEHHHHHHHHHHHHHCCEEEECCEEEECCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHH
VRRYKGKVYCWDVVNEAVADEGSEWLRSSKWRQIIGDDFIEQAFLCAHEADPDALLFYND
HHHHCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
YNECFPKKREKIYTLVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLDVVLH
CHHHCHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCHHHHHHHHHHHCCCEEEEE
ITELDVSMFEFHDHRKDLAAPTNEMIERQAERYEQIFTLFKEYRDVIESVTFWGMADDYT
EEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
WLDHFPVQGRKNWPFLFDEQHEPKSAFWRVASI
HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
SVSQSLPSLREVFANDFRIGAAVNPVTIESQKQLLISHVNSLTAENHMKFEHLQPEEGR
CCHHCCHHHHHHHHCCCEECCCCCCEEECHHHHHHHHHHHHHHHHCCCCHHCCCCCCCC
FTFDIADRIVDFARSHHMAVRGHTLVWHNQTPDWVFQDGQGHFISRDVLLERMKSHISAV
EEHHHHHHHHHHHHHCCEEEECCEEEECCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHH
VRRYKGKVYCWDVVNEAVADEGSEWLRSSKWRQIIGDDFIEQAFLCAHEADPDALLFYND
HHHHCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
YNECFPKKREKIYTLVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLDVVLH
CHHHCHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCHHHHHHHHHHHCCCEEEEE
ITELDVSMFEFHDHRKDLAAPTNEMIERQAERYEQIFTLFKEYRDVIESVTFWGMADDYT
EEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
WLDHFPVQGRKNWPFLFDEQHEPKSAFWRVASI
HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8074507 [H]