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The map label for this gene is uxuR [H]

Identifier: 138895422

GI number: 138895422

Start: 1867971

End: 1868669

Strand: Reverse

Name: uxuR [H]

Synonym: GTNG_1766

Alternate gene names: 138895422

Gene position: 1868669-1867971 (Counterclockwise)

Preceding gene: 138895423

Following gene: 138895421

Centisome position: 52.63

GC content: 38.34

Gene sequence:

>699_bases
GTGATTTTTTCTGCTCAACAAAGCCAACAAATTAAAAATTCTGTCAAAGGTTCGGCACGTGACCAGTTGTATGACATGTT
GAAGGAAAAGATTTTACGGCTTGAGCTGGAACCGGGAACGAAAATTTCAGAAAAAGAAATTGCCGAACAGCTCCATATTA
GCCGTACTCCAGTGCGGGAAGCGTTCTTAAAACTGGCGCAAGATGAGTTGCTTGATATTATTCCTCAAAGTGGAACGATT
GTTTCACGTATTAATTTGGAATATGTGGAAGAAGGACGATTGATTCGTGAGGTCGTTGAAAAGGAAGTAGCTGCTTTAGC
GTGCGTAAAGTTTCGCGAGGATCATTTATTTCAGTTGGAAAAAAATATTACGATGCAAGAGTTATGTGTCGAAAGAGGGA
ACTTCCTTGAACTTTTTGAGCTGGATGAAGCGTTTCATCAGCTTATTTATGACGGATGCCGTATGTCTCGTTCATGGAAA
ATGATTCAAAATTTAAACATTCATTTTAATCGTTTGCGTGTGCTCCGACTCTCTTCAAATTTAGATTGGGATATTATTAT
TTCTCATCATAAGCAAATTTGCCAATTGATTGCGAATAAGGAAGCAGATAAGGTGCGTCAAGTGATGGAGGAACATTTGC
GGCTTGTTGAGATTGAAAAAGATATGTTGAAAAGGCAATATCCGCATTACTTTGTTTAA

Upstream 100 bases:

>100_bases
CAGGAAATATTCCTTTTATTACATTTGTAAAAAAGAAACAGTATATAACGAACGAAGCTTGTTTCTACCATACTAGTATA
TAAAAAAGGAGAATCAAAAG

Downstream 100 bases:

>100_bases
GTGGCTAAAAATCCCATTGACGTGAAGGGAGAGGAGAAACGATGCAGCCGTTCATTGATGATCGTTTTTTGCTGCAAAAT
AAACATGCCGAAGTGTTGTA

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MIFSAQQSQQIKNSVKGSARDQLYDMLKEKILRLELEPGTKISEKEIAEQLHISRTPVREAFLKLAQDELLDIIPQSGTI
VSRINLEYVEEGRLIREVVEKEVAALACVKFREDHLFQLEKNITMQELCVERGNFLELFELDEAFHQLIYDGCRMSRSWK
MIQNLNIHFNRLRVLRLSSNLDWDIIISHHKQICQLIANKEADKVRQVMEEHLRLVEIEKDMLKRQYPHYFV

Sequences:

>Translated_232_residues
MIFSAQQSQQIKNSVKGSARDQLYDMLKEKILRLELEPGTKISEKEIAEQLHISRTPVREAFLKLAQDELLDIIPQSGTI
VSRINLEYVEEGRLIREVVEKEVAALACVKFREDHLFQLEKNITMQELCVERGNFLELFELDEAFHQLIYDGCRMSRSWK
MIQNLNIHFNRLRVLRLSSNLDWDIIISHHKQICQLIANKEADKVRQVMEEHLRLVEIEKDMLKRQYPHYFV
>Mature_232_residues
MIFSAQQSQQIKNSVKGSARDQLYDMLKEKILRLELEPGTKISEKEIAEQLHISRTPVREAFLKLAQDELLDIIPQSGTI
VSRINLEYVEEGRLIREVVEKEVAALACVKFREDHLFQLEKNITMQELCVERGNFLELFELDEAFHQLIYDGCRMSRSWK
MIQNLNIHFNRLRVLRLSSNLDWDIIISHHKQICQLIANKEADKVRQVMEEHLRLVEIEKDMLKRQYPHYFV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=193, Percent_Identity=34.1968911917098, Blast_Score=131, Evalue=3e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27460; Mature: 27460

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFSAQQSQQIKNSVKGSARDQLYDMLKEKILRLELEPGTKISEKEIAEQLHISRTPVRE
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCHHHH
AFLKLAQDELLDIIPQSGTIVSRINLEYVEEGRLIREVVEKEVAALACVKFREDHLFQLE
HHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNITMQELCVERGNFLELFELDEAFHQLIYDGCRMSRSWKMIQNLNIHFNRLRVLRLSSN
HCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEEEECCC
LDWDIIISHHKQICQLIANKEADKVRQVMEEHLRLVEIEKDMLKRQYPHYFV
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIFSAQQSQQIKNSVKGSARDQLYDMLKEKILRLELEPGTKISEKEIAEQLHISRTPVRE
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCHHHH
AFLKLAQDELLDIIPQSGTIVSRINLEYVEEGRLIREVVEKEVAALACVKFREDHLFQLE
HHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNITMQELCVERGNFLELFELDEAFHQLIYDGCRMSRSWKMIQNLNIHFNRLRVLRLSSN
HCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEEEECCC
LDWDIIISHHKQICQLIANKEADKVRQVMEEHLRLVEIEKDMLKRQYPHYFV
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]