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The map label for this gene is yodJ [H]

Identifier: 138895090

GI number: 138895090

Start: 1515743

End: 1516570

Strand: Direct

Name: yodJ [H]

Synonym: GTNG_1428

Alternate gene names: 138895090

Gene position: 1515743-1516570 (Clockwise)

Preceding gene: 138895089

Following gene: 138895092

Centisome position: 42.69

GC content: 55.68

Gene sequence:

>828_bases
ATGAACCAACGATGGAAAATAGCAATGTTGGCGTGCCTGCTGCTCGCTGGCTGCCAAACAGGGGAAAGTGGTGATCGCAG
CTCGGTCGGCTCGTCCGAACAGCCCCCGGAAAGCGCGGTGCAGCCAGGCAGCCATGAACCGGGTGAAACAGACCAACACC
CGGTTGACCCAGTTGACCCCGACTTGCAGCTTGAGGCGAAATATTGGAACGTCATTAAGGTGGAAAACGGGAAAAAAGTG
ATTATGAACCCGGATAACATTTTAGTGCTCGTTAATAAAGAACAGTCGCTTCCGCCTAGCTACAAGCCGGCCGATTTAGT
TGTGCCGAACGTGCGGTTCTCGTTTGATGACCCGAAGGCAGAGAAGCGGCATATGCGGGCTGAGGCGGCTGCGGCGCTTG
AAGAGCTGTTTGCCGCCGCCCGCCGCGACGGCATTGAACTTGTGGCTGTCTCCGCCTACCGGTCGTATGAGCGGCAGCAA
GTGGTTTTTGCGGAAGAAGTGCGGCAAAAAGGGGAAGCAGAAGCCGTCCAAGCGGTCGCCTATCCGGGGCAGAGCGAGCA
TCAAACCGGGCTTGCGATCGACATTAGCAGCCGCTCGGCCGGCTATCAGCTGACGGAAGCGTTCGGAGCGACAAAAGAAG
GACAATGGGTCGCCGCCCATGCGCACGAGTACGGGTTTATTATCCGCTATCCGAAAGGAAAGGAAGCGGTGACCGGCTAT
AAGTATGAGCCATGGCATATCCGTTATGTTGGGCGGAAGGCGGCCGTGGTGATGAAGAAGCGTGACTGGACGCTTGAAGA
ATATTTTCAAGCAGTAAAAAAAGTGTAA

Upstream 100 bases:

>100_bases
CATGATTGAAGTGGCGCTCGAAGCGGCGAGCCGCAACGATGCGTAACAGTTGTGCCGAGACCGTCTAGCGCGCTTCAAGA
AACAGAAAAGGGGAAGACGA

Downstream 100 bases:

>100_bases
ACAGAACTAGGCGCCTCCTTTCGTGTGATGACACATGAAAGGAGGCGTTGTTCATTGACTGGAAAGGGGGCATCATTGTT
TAGAACAGTGATGAATGTCT

Product: carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MNQRWKIAMLACLLLAGCQTGESGDRSSVGSSEQPPESAVQPGSHEPGETDQHPVDPVDPDLQLEAKYWNVIKVENGKKV
IMNPDNILVLVNKEQSLPPSYKPADLVVPNVRFSFDDPKAEKRHMRAEAAAALEELFAAARRDGIELVAVSAYRSYERQQ
VVFAEEVRQKGEAEAVQAVAYPGQSEHQTGLAIDISSRSAGYQLTEAFGATKEGQWVAAHAHEYGFIIRYPKGKEAVTGY
KYEPWHIRYVGRKAAVVMKKRDWTLEEYFQAVKKV

Sequences:

>Translated_275_residues
MNQRWKIAMLACLLLAGCQTGESGDRSSVGSSEQPPESAVQPGSHEPGETDQHPVDPVDPDLQLEAKYWNVIKVENGKKV
IMNPDNILVLVNKEQSLPPSYKPADLVVPNVRFSFDDPKAEKRHMRAEAAAALEELFAAARRDGIELVAVSAYRSYERQQ
VVFAEEVRQKGEAEAVQAVAYPGQSEHQTGLAIDISSRSAGYQLTEAFGATKEGQWVAAHAHEYGFIIRYPKGKEAVTGY
KYEPWHIRYVGRKAAVVMKKRDWTLEEYFQAVKKV
>Mature_275_residues
MNQRWKIAMLACLLLAGCQTGESGDRSSVGSSEQPPESAVQPGSHEPGETDQHPVDPVDPDLQLEAKYWNVIKVENGKKV
IMNPDNILVLVNKEQSLPPSYKPADLVVPNVRFSFDDPKAEKRHMRAEAAAALEELFAAARRDGIELVAVSAYRSYERQQ
VVFAEEVRQKGEAEAVQAVAYPGQSEHQTGLAIDISSRSAGYQLTEAFGATKEGQWVAAHAHEYGFIIRYPKGKEAVTGY
KYEPWHIRYVGRKAAVVMKKRDWTLEEYFQAVKKV

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 30672; Mature: 30672

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQRWKIAMLACLLLAGCQTGESGDRSSVGSSEQPPESAVQPGSHEPGETDQHPVDPVDP
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
DLQLEAKYWNVIKVENGKKVIMNPDNILVLVNKEQSLPPSYKPADLVVPNVRFSFDDPKA
CEEEEEEEEEEEEECCCCEEEECCCCEEEEEECCCCCCCCCCCCCEEECCEEEECCCCHH
EKRHMRAEAAAALEELFAAARRDGIELVAVSAYRSYERQQVVFAEEVRQKGEAEAVQAVA
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHHHHHHHHCCCHHHHHHEE
YPGQSEHQTGLAIDISSRSAGYQLTEAFGATKEGQWVAAHAHEYGFIIRYPKGKEAVTGY
CCCCCCCCCCEEEEECCCCCCEEHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC
KYEPWHIRYVGRKAAVVMKKRDWTLEEYFQAVKKV
CCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHCC
>Mature Secondary Structure
MNQRWKIAMLACLLLAGCQTGESGDRSSVGSSEQPPESAVQPGSHEPGETDQHPVDPVDP
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
DLQLEAKYWNVIKVENGKKVIMNPDNILVLVNKEQSLPPSYKPADLVVPNVRFSFDDPKA
CEEEEEEEEEEEEECCCCEEEECCCCEEEEEECCCCCCCCCCCCCEEECCEEEECCCCHH
EKRHMRAEAAAALEELFAAARRDGIELVAVSAYRSYERQQVVFAEEVRQKGEAEAVQAVA
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHHHHHHHHCCCHHHHHHEE
YPGQSEHQTGLAIDISSRSAGYQLTEAFGATKEGQWVAAHAHEYGFIIRYPKGKEAVTGY
CCCCCCCCCCEEEEECCCCCCEEHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC
KYEPWHIRYVGRKAAVVMKKRDWTLEEYFQAVKKV
CCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]