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The map label for this gene is glnR [H]

Identifier: 138894845

GI number: 138894845

Start: 1252289

End: 1252690

Strand: Direct

Name: glnR [H]

Synonym: GTNG_1181

Alternate gene names: 138894845

Gene position: 1252289-1252690 (Clockwise)

Preceding gene: 138894844

Following gene: 138894846

Centisome position: 35.27

GC content: 52.24

Gene sequence:

>402_bases
ATGAGCAGCCACATTCGTCGTTCCATGCCATTGTTTCCGATTGGGATCGTGATGCAGCTGACGGACTTATCAGCGCGCCA
AATCCGCTATTATGAAGAGCACGGCCTCGTTATGCCAGCGCGCACCGAGGGCAACCGGCGGCTGTTTTCGCTCAATGATA
TCGACCGTTTGCTTGAAATTAAAGATTTAATTGACCAAGGTGTCAACCTTGCCGGCATTAAGCGAATTTTTGCCGCTCAG
CAAGAGGGGCACCATGAACCGTCAGAAAAAGTTGGAAAAGCAGAAAAACCGAAGCTGTCGGACGAGGAGTTGCGCGAAAT
GTTGCGGACGGAGTTGCTGCAGGCCGGACGGTTTCAGCGCGCATCGCTTCGCCAAGGAGATCTCGCTCGCTTCTTTCATT
AA

Upstream 100 bases:

>100_bases
GAACAGCAGTTGATTTGTTTGTGAGAAAATGTAACATCTCATTGACTCATTTCTTAACATTATGGTAAAATAAAGGTATC
AAAAGCGAGGAGGAATTGGC

Downstream 100 bases:

>100_bases
TGATGGAAAATGATTTCGGAGCCGGGGAGGAGTTTAGATATGGCAAAATATACGCGCGAAGACATTATGCGCATCGTCAA
AGAAGAAAACGTCAAGTACA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSSHIRRSMPLFPIGIVMQLTDLSARQIRYYEEHGLVMPARTEGNRRLFSLNDIDRLLEIKDLIDQGVNLAGIKRIFAAQ
QEGHHEPSEKVGKAEKPKLSDEELREMLRTELLQAGRFQRASLRQGDLARFFH

Sequences:

>Translated_133_residues
MSSHIRRSMPLFPIGIVMQLTDLSARQIRYYEEHGLVMPARTEGNRRLFSLNDIDRLLEIKDLIDQGVNLAGIKRIFAAQ
QEGHHEPSEKVGKAEKPKLSDEELREMLRTELLQAGRFQRASLRQGDLARFFH
>Mature_132_residues
SSHIRRSMPLFPIGIVMQLTDLSARQIRYYEEHGLVMPARTEGNRRLFSLNDIDRLLEIKDLIDQGVNLAGIKRIFAAQQ
EGHHEPSEKVGKAEKPKLSDEELREMLRTELLQAGRFQRASLRQGDLARFFH

Specific function: Represses many genes including the glnRA operon and tnrA during growth with nitrogen excess [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 15381; Mature: 15250

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHIRRSMPLFPIGIVMQLTDLSARQIRYYEEHGLVMPARTEGNRRLFSLNDIDRLLEI
CCCCHHHCCCCCHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCCCEEECHHHHHHHHHH
KDLIDQGVNLAGIKRIFAAQQEGHHEPSEKVGKAEKPKLSDEELREMLRTELLQAGRFQR
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCH
ASLRQGDLARFFH
HHCCCCCHHHHCC
>Mature Secondary Structure 
SSHIRRSMPLFPIGIVMQLTDLSARQIRYYEEHGLVMPARTEGNRRLFSLNDIDRLLEI
CCCHHHCCCCCHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCCCEEECHHHHHHHHHH
KDLIDQGVNLAGIKRIFAAQQEGHHEPSEKVGKAEKPKLSDEELREMLRTELLQAGRFQR
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCH
ASLRQGDLARFFH
HHCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2906311; 2573733; 1677938; 9384377 [H]