Click here to switch to the map view.

The map label for this gene is rbgA [H]

Identifier: 138894725

GI number: 138894725

Start: 1123790

End: 1124650

Strand: Direct

Name: rbgA [H]

Synonym: GTNG_1057

Alternate gene names: 138894725

Gene position: 1123790-1124650 (Clockwise)

Preceding gene: 138894724

Following gene: 138894726

Centisome position: 31.65

GC content: 51.68

Gene sequence:

>861_bases
ATGACGATGATTCAATGGTTTCCCGGCCATATGGCGAAAGCGAAGCGGGAAGTACAAGAAAAACTAAAACTGATCGATGT
GGCGTTCGAACTGCTTGACGCCCGCGTGCCGATGTCGTCACGCAACCCGATGATTGACGATATTCTCGGCCAAAAAACGC
GCCTCATTTTACTCAATAAAGCCGATATGGCCGATGAGGCAGTAACGGAACAATGGATCCGCTATTTCCGTGACCAAGGG
AGAACAGCCATAGCCATCGATGCGCAAAGCGGAACCGGAGTAAAACAAATCGTCGCTGCGGCGAAAGAGATGGTGAAAGA
CAAGTTCGAAAAAATGAGGGCGAAAGGAATTAAAAATCCGCGTCCGGTGCGGGCGCTTATTGTCGGCATTCCGAACGTCG
GCAAATCAACGCTTATCAATCGGCTTGCCGGCCGCCATATCGCCAAAACCGGCGATAAGCCGGGGGTGACAAAAGCGCAG
CAATGGATTAAAGTCGGAAAAGAGATGGAGCTGCTCGATACGCCCGGCATTTTATGGCCGAAGTTTGAAGATGAGGATGT
CGGTTACAGGCTGGCAGTTACGGGCGCGATTAAGGACGAAATTTTAAATTTGCAGGACGTTGCGGTGTACGCGCTTCGCT
TTTTATCCAGCCATTATCCCGAGCGGATTACGGAGCGCTATGGCCTTGACCGCATTCCTGATGACATTGTGGCTTTGTTT
GATGCCATCGGCCGACGGCGCGGCTGCCTGACAGGGGGCGGCGGCATCGATTACGATAAAGTGGCCGACATCGTCTTGTA
TGACATTCGCACAGAAAAATTAGGACGGCTCAGCTTTGAAACGCCCGCTTTATGGACGTAA

Upstream 100 bases:

>100_bases
CGGTTTCATTCCGATGGAGAAAGTTGTCGGCAAGGCGAATATTGTCTACTGGCCGCTTGGTGGCGTCCGGATTGCGAAAT
AAATGAGGCAGGTGATGCCA

Downstream 100 bases:

>100_bases
TGCGTCTGGCGGGCGTTTTTCCTTTGAATGAATGTTTCGCTTCACAACGCGCGGAATGCGTCCGATAGTATAAGTAGAAA
AGGGAGAGGGTTATGAAACA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MTMIQWFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDDILGQKTRLILLNKADMADEAVTEQWIRYFRDQG
RTAIAIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNPRPVRALIVGIPNVGKSTLINRLAGRHIAKTGDKPGVTKAQ
QWIKVGKEMELLDTPGILWPKFEDEDVGYRLAVTGAIKDEILNLQDVAVYALRFLSSHYPERITERYGLDRIPDDIVALF
DAIGRRRGCLTGGGGIDYDKVADIVLYDIRTEKLGRLSFETPALWT

Sequences:

>Translated_286_residues
MTMIQWFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDDILGQKTRLILLNKADMADEAVTEQWIRYFRDQG
RTAIAIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNPRPVRALIVGIPNVGKSTLINRLAGRHIAKTGDKPGVTKAQ
QWIKVGKEMELLDTPGILWPKFEDEDVGYRLAVTGAIKDEILNLQDVAVYALRFLSSHYPERITERYGLDRIPDDIVALF
DAIGRRRGCLTGGGGIDYDKVADIVLYDIRTEKLGRLSFETPALWT
>Mature_285_residues
TMIQWFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDDILGQKTRLILLNKADMADEAVTEQWIRYFRDQGR
TAIAIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNPRPVRALIVGIPNVGKSTLINRLAGRHIAKTGDKPGVTKAQQ
WIKVGKEMELLDTPGILWPKFEDEDVGYRLAVTGAIKDEILNLQDVAVYALRFLSSHYPERITERYGLDRIPDDIVALFD
AIGRRRGCLTGGGGIDYDKVADIVLYDIRTEKLGRLSFETPALWT

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=268, Percent_Identity=33.2089552238806, Blast_Score=158, Evalue=5e-39,
Organism=Homo sapiens, GI296317324, Length=288, Percent_Identity=28.4722222222222, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI9506611, Length=288, Percent_Identity=28.4722222222222, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI7019419, Length=259, Percent_Identity=26.2548262548263, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45643129, Length=261, Percent_Identity=23.3716475095785, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI45643127, Length=261, Percent_Identity=23.3716475095785, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI45593130, Length=261, Percent_Identity=23.3716475095785, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17534827, Length=273, Percent_Identity=30.03663003663, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193211047, Length=227, Percent_Identity=28.1938325991189, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI25143545, Length=285, Percent_Identity=24.5614035087719, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563985, Length=247, Percent_Identity=25.5060728744939, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71990926, Length=247, Percent_Identity=25.5060728744939, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI115535155, Length=285, Percent_Identity=24.5614035087719, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI32563983, Length=247, Percent_Identity=25.5060728744939, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71982363, Length=187, Percent_Identity=28.8770053475936, Blast_Score=77, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323744, Length=236, Percent_Identity=29.2372881355932, Blast_Score=82, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6324381, Length=275, Percent_Identity=24.7272727272727, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6320842, Length=283, Percent_Identity=28.9752650176678, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI85815858, Length=307, Percent_Identity=28.9902280130293, Blast_Score=126, Evalue=1e-29,
Organism=Drosophila melanogaster, GI19922460, Length=272, Percent_Identity=26.4705882352941, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28572990, Length=185, Percent_Identity=30.8108108108108, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32134; Mature: 32003

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMIQWFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDDILGQKTRLILLNK
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEEEEC
ADMADEAVTEQWIRYFRDQGRTAIAIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNP
CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
RPVRALIVGIPNVGKSTLINRLAGRHIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWP
CCEEEEEEECCCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCC
KFEDEDVGYRLAVTGAIKDEILNLQDVAVYALRFLSSHYPERITERYGLDRIPDDIVALF
CCCCCCCCEEEEEEHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHH
DAIGRRRGCLTGGGGIDYDKVADIVLYDIRTEKLGRLSFETPALWT
HHHHHHCCCCCCCCCCCHHHHHHHHHEECCHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TMIQWFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDDILGQKTRLILLNK
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEEEEC
ADMADEAVTEQWIRYFRDQGRTAIAIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNP
CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
RPVRALIVGIPNVGKSTLINRLAGRHIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWP
CCEEEEEEECCCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCC
KFEDEDVGYRLAVTGAIKDEILNLQDVAVYALRFLSSHYPERITERYGLDRIPDDIVALF
CCCCCCCCEEEEEEHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHH
DAIGRRRGCLTGGGGIDYDKVADIVLYDIRTEKLGRLSFETPALWT
HHHHHHCCCCCCCCCCCHHHHHHHHHEECCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]