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The map label for this gene is rimM [H]

Identifier: 138894721

GI number: 138894721

Start: 1121369

End: 1121896

Strand: Direct

Name: rimM [H]

Synonym: GTNG_1053

Alternate gene names: 138894721

Gene position: 1121369-1121896 (Clockwise)

Preceding gene: 138894720

Following gene: 138894722

Centisome position: 31.59

GC content: 48.86

Gene sequence:

>528_bases
ATGAAGGTGATGGAACGATGGTTTAACGTTGGCAAGATCGTCAACACACACGGTATTCGCGGTGAAGTGCGCGTCATTTC
GCGAACCGATTTTCCGGAAGAGCGGTACAAAAAAGGAAACAAACTGTACATTTTCCGTGAATGCGACACTGAGCCGATTG
AAGTGACTGTAAAGAGCCACCGCGTTCATAAGTCGTTCGATTTGCTATCGTTTGAAGGGTATGACAGCATTAATGACGTC
GAGCCGTTTAAAGGGGCAATGCTGAAGGTGCCGGAGAGCCAGCTTGGCGAGCTGAACGAAGGAGAATATTATTTCCATGA
AATTATCGATTGTACGGTTGTGACGGAAGCAGGCGAAACGATCGGTAAAGTAAAAGAAATTTTAACGCCGGGTGCGAATG
ACGTTTGGGTCGTCCGGCGCCAAGACGGCACCGACGCACTCATTCCGTATATTGACGATGTCGTCATGCACGTCGACCCT
GAACGGAAGATAATCATCATCCGGCCGATGGAAGGGCTGCTTGAATGA

Upstream 100 bases:

>100_bases
GCTTATCGAGGTGAACGTCGGCGACCGCTGGGAAGAGGTGACAAAGGCGCGTGCCATCATCGTTGAAGATGGCGTCGTCA
AAGAGATTCGTTAAGAGGGG

Downstream 100 bases:

>100_bases
TGCGCATCGATATTTTAACGCTGTTTCCCGACATGTTTCCCGGCGTGCTGAATGAGTCGATTTTAAAGAAGGCGCAAGAA
AAGGGAGCAGTGAACATCCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKVMERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSHRVHKSFDLLSFEGYDSINDV
EPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVVTEAGETIGKVKEILTPGANDVWVVRRQDGTDALIPYIDDVVMHVDP
ERKIIIIRPMEGLLE

Sequences:

>Translated_175_residues
MKVMERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSHRVHKSFDLLSFEGYDSINDV
EPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVVTEAGETIGKVKEILTPGANDVWVVRRQDGTDALIPYIDDVVMHVDP
ERKIIIIRPMEGLLE
>Mature_175_residues
MKVMERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSHRVHKSFDLLSFEGYDSINDV
EPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVVTEAGETIGKVKEILTPGANDVWVVRRQDGTDALIPYIDDVVMHVDP
ERKIIIIRPMEGLLE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=153, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20169; Mature: 20169

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVMERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSH
CCHHHHHHHHCCEEECCCCCCEEEEEECCCCCHHHHCCCCEEEEEEECCCCCEEEEEECC
RVHKSFDLLSFEGYDSINDVEPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVVTEAGET
EEECCCCEEEECCCCCCCCCCCCCCCEEECCHHHHCCCCCCCEEEEEHEEEEEEECCHHH
IGKVKEILTPGANDVWVVRRQDGTDALIPYIDDVVMHVDPERKIIIIRPMEGLLE
HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHEEEEECCCCEEEEEECCHHHCC
>Mature Secondary Structure
MKVMERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSH
CCHHHHHHHHCCEEECCCCCCEEEEEECCCCCHHHHCCCCEEEEEEECCCCCEEEEEECC
RVHKSFDLLSFEGYDSINDVEPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVVTEAGET
EEECCCCEEEECCCCCCCCCCCCCCCEEECCHHHHCCCCCCCEEEEEHEEEEEEECCHHH
IGKVKEILTPGANDVWVVRRQDGTDALIPYIDDVVMHVDPERKIIIIRPMEGLLE
HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHEEEEECCCCEEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA