Click here to switch to the map view.

The map label for this gene is rpoZ [H]

Identifier: 138894689

GI number: 138894689

Start: 1089715

End: 1089921

Strand: Direct

Name: rpoZ [H]

Synonym: GTNG_1021

Alternate gene names: 138894689

Gene position: 1089715-1089921 (Clockwise)

Preceding gene: 138894688

Following gene: 138894690

Centisome position: 30.69

GC content: 44.44

Gene sequence:

>207_bases
ATGACGATGTTGTATCCTTCCATCGATTTGCTTATGAAAAAAGTGGATTCGAAATATAAGCTTGTTACGGTTGTCGCGAA
ACGGGCGCGTCAGCTTCAAGACGGCTCGGAGCTGATGGTGAACAAGCCAGTGTCGAAAAAATTTGTCGGCCAGGCATTAG
AGGAAATTGCCGGCGACAAGGTTGAATTAGTGGAAGAAGAAAAATAA

Upstream 100 bases:

>100_bases
AGATCGAGCTCGCATGCGAGCGAATCAAGGCGATCGTCATGGCCGAACATTGTCGGCGTGAGCGCGTCGCCGAGCGATAT
AAACGGATGTTGGAGGTGGA

Downstream 100 bases:

>100_bases
CAACCTAGCTGTTAGGTTGTTATTTTTTTCAATATCGGGGGTGGCGAAGATGATGAAGGGGAAACATATTTTGCTCTGCG
TCACCGGAGGGGTGGCCGCC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MTMLYPSIDLLMKKVDSKYKLVTVVAKRARQLQDGSELMVNKPVSKKFVGQALEEIAGDKVELVEEEK

Sequences:

>Translated_68_residues
MTMLYPSIDLLMKKVDSKYKLVTVVAKRARQLQDGSELMVNKPVSKKFVGQALEEIAGDKVELVEEEK
>Mature_67_residues
TMLYPSIDLLMKKVDSKYKLVTVVAKRARQLQDGSELMVNKPVSKKFVGQALEEIAGDKVELVEEEK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 7697; Mature: 7566

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMLYPSIDLLMKKVDSKYKLVTVVAKRARQLQDGSELMVNKPVSKKFVGQALEEIAGDK
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCCCC
VELVEEEK
CHHCCCCC
>Mature Secondary Structure 
TMLYPSIDLLMKKVDSKYKLVTVVAKRARQLQDGSELMVNKPVSKKFVGQALEEIAGDK
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCCCC
VELVEEEK
CHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA