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The map label for this gene is ylmE [H]

Identifier: 138894666

GI number: 138894666

Start: 1062019

End: 1062693

Strand: Direct

Name: ylmE [H]

Synonym: GTNG_0996

Alternate gene names: 138894666

Gene position: 1062019-1062693 (Clockwise)

Preceding gene: 138894665

Following gene: 138894667

Centisome position: 29.91

GC content: 52.74

Gene sequence:

>675_bases
ATGACGGTACGTGACAACTTAGCTGCCATTCGCCGGCAAATTGAGGGAGCTTGCGCCCGCGTTGGCCGTGATCCGGCCGA
CGTACGCATCGTAGCAGTAACGAAATATATTAATGCGGCAAGAGCGCAGGAGGTGCTTGATGCCGGCATTGTCGACCTCG
GCGAAAACCGTTCCGACCAACTGCTGCAAAAATATGAGGTTATCGGGAAACAAGCGACGTGGCATTTTATTGGGACGCTC
CAGTCGCGCAAGGTGAAGGAGATTATCGATAAAGTCGATTACATTCATTCGCTTGACCGCCTTTCGCTTGCTAAGGAGAT
TGAGAAGCGGGCGGTGCGTCCAGTGAAATGTTTTGTGCAGGTGAACGTATCAGGTGAGGCGACGAAGCACGGGCTCGCCC
CTGACGAAACAGTCCCGTTTATCGAACAGCTTCGCTCGTTTCCATGCATTGAAGTGATCGGATTGATGACGATGGCGCCG
CATACGGAGGACAAAAGTGTATTGCGCGCTTGTTTCCGTCAATTGCGAATGCTCAAAGAACGCGTCCAGGCGTTAAATTT
GCCTTATGCACCATGCACCGAGCTGTCGATGGGCATGTCAAACGACTATGAGATCGCCATCGAGGAAGGAGCGACGTTTG
TACGCATCGGCAGTGCGCTTGTCGGATCATTGTAG

Upstream 100 bases:

>100_bases
GCTGTACAAGCTGTGAGGAGACACTGTTTTTTTCTCACCGCCGCGACCGCGGGACAACGGGACGGATGTTGGCGTTCATC
GGCCGAAGGGAGGAGACGAC

Downstream 100 bases:

>100_bases
GAGGTGAGACCGGTGGGATTGATGAAAAAATTTCGCGATTATTTTTTAGAGGAAGACTACGAAGACTATGAAGAAGAATA
TGAAGCGCCGCAGCAGGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTVRDNLAAIRRQIEGACARVGRDPADVRIVAVTKYINAARAQEVLDAGIVDLGENRSDQLLQKYEVIGKQATWHFIGTL
QSRKVKEIIDKVDYIHSLDRLSLAKEIEKRAVRPVKCFVQVNVSGEATKHGLAPDETVPFIEQLRSFPCIEVIGLMTMAP
HTEDKSVLRACFRQLRMLKERVQALNLPYAPCTELSMGMSNDYEIAIEEGATFVRIGSALVGSL

Sequences:

>Translated_224_residues
MTVRDNLAAIRRQIEGACARVGRDPADVRIVAVTKYINAARAQEVLDAGIVDLGENRSDQLLQKYEVIGKQATWHFIGTL
QSRKVKEIIDKVDYIHSLDRLSLAKEIEKRAVRPVKCFVQVNVSGEATKHGLAPDETVPFIEQLRSFPCIEVIGLMTMAP
HTEDKSVLRACFRQLRMLKERVQALNLPYAPCTELSMGMSNDYEIAIEEGATFVRIGSALVGSL
>Mature_223_residues
TVRDNLAAIRRQIEGACARVGRDPADVRIVAVTKYINAARAQEVLDAGIVDLGENRSDQLLQKYEVIGKQATWHFIGTLQ
SRKVKEIIDKVDYIHSLDRLSLAKEIEKRAVRPVKCFVQVNVSGEATKHGLAPDETVPFIEQLRSFPCIEVIGLMTMAPH
TEDKSVLRACFRQLRMLKERVQALNLPYAPCTELSMGMSNDYEIAIEEGATFVRIGSALVGSL

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=233, Percent_Identity=36.480686695279, Blast_Score=114, Evalue=5e-26,
Organism=Escherichia coli, GI1789321, Length=225, Percent_Identity=32.8888888888889, Blast_Score=118, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17533025, Length=209, Percent_Identity=31.1004784688995, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6319435, Length=224, Percent_Identity=30.3571428571429, Blast_Score=93, Evalue=3e-20,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=30.8056872037915, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24966; Mature: 24835

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRDNLAAIRRQIEGACARVGRDPADVRIVAVTKYINAARAQEVLDAGIVDLGENRSDQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LLQKYEVIGKQATWHFIGTLQSRKVKEIIDKVDYIHSLDRLSLAKEIEKRAVRPVKCFVQ
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VNVSGEATKHGLAPDETVPFIEQLRSFPCIEVIGLMTMAPHTEDKSVLRACFRQLRMLKE
EECCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
RVQALNLPYAPCTELSMGMSNDYEIAIEEGATFVRIGSALVGSL
HHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCEEHHHHHHCCC
>Mature Secondary Structure 
TVRDNLAAIRRQIEGACARVGRDPADVRIVAVTKYINAARAQEVLDAGIVDLGENRSDQ
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LLQKYEVIGKQATWHFIGTLQSRKVKEIIDKVDYIHSLDRLSLAKEIEKRAVRPVKCFVQ
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VNVSGEATKHGLAPDETVPFIEQLRSFPCIEVIGLMTMAPHTEDKSVLRACFRQLRMLKE
EECCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
RVQALNLPYAPCTELSMGMSNDYEIAIEEGATFVRIGSALVGSL
HHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]