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The map label for this gene is ylmD [H]

Identifier: 138894665

GI number: 138894665

Start: 1061198

End: 1062022

Strand: Direct

Name: ylmD [H]

Synonym: GTNG_0995

Alternate gene names: 138894665

Gene position: 1061198-1062022 (Clockwise)

Preceding gene: 138894664

Following gene: 138894666

Centisome position: 29.89

GC content: 56.73

Gene sequence:

>825_bases
ATGCCGGACATTTTTCAACAAACGGCTTATGAATGGCTTCTCTGCGGGGCGCCCCCATTCGCCGGGGCCGTCGCAGGGAT
AACGACGAAACAAGGCGGGGAAAGCAAAGGATCGTTCGCTTCCTTGAATATGGGACTGCATGTTGGCGACGACCGCACTG
CCGTCGTCAATAATCGGCGCCGTCTAGCCGCATCGCTTGTTTTTCCCCTTGATGATTGGGTGTGCTGTGAGCAAGTGCAC
GGCGCCGTGATCCAGAAAGTGACGAAAAGCGATCGGGGAAGCGGGGCACAAGATTTCGCTACAGCAGTTCGGGGCGCTGA
CGGGTTGTATACGGATGAGTCGGGAGTATTGCTCGCCCTTTGTTTTGCTGATTGTGTGCCTGTCTATTTTATGGCTCCAT
CCGTCGGCTTGGTCGGTCTTGCTCATGCTGGTTGGCGAGGAACGGCCGGCGGCATCGCTCAAAACATGGTACGGCTTTGG
CAAGAACGCGAGCATGTTGCACCCGCTGATGTGTACGCTGCCATTGGACCAGCCATCGGCCCGTGCTGCTACACGGTCGA
TGACCGGGTGATCGAAGGTTTGCGTTCGACTGTTCCTGCGGGCAGCCCTTTGCCATGGCGTGAAACAAGCCCAGGGCAAT
ATGCGCTTGACTTAAAGGAGGCGAATCGGTTGCAGCTTATTGCTGCCGGTGTTCCTGATAGCCATATTTACGTGTCCGAA
CGCTGTACAAGCTGTGAGGAGACACTGTTTTTTTCTCACCGCCGCGACCGCGGGACAACGGGACGGATGTTGGCGTTCAT
CGGCCGAAGGGAGGAGACGACATGA

Upstream 100 bases:

>100_bases
CAACAAAATTGTAAATAAAGATTATCACGTTTAAGCAAACTATGATAAAATAGGAAAAAAAGTGATAAAAATCTACAAAA
AAAGCGTGAGGTTGACACGA

Downstream 100 bases:

>100_bases
CGGTACGTGACAACTTAGCTGCCATTCGCCGGCAAATTGAGGGAGCTTGCGCCCGCGTTGGCCGTGATCCGGCCGACGTA
CGCATCGTAGCAGTAACGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MPDIFQQTAYEWLLCGAPPFAGAVAGITTKQGGESKGSFASLNMGLHVGDDRTAVVNNRRRLAASLVFPLDDWVCCEQVH
GAVIQKVTKSDRGSGAQDFATAVRGADGLYTDESGVLLALCFADCVPVYFMAPSVGLVGLAHAGWRGTAGGIAQNMVRLW
QEREHVAPADVYAAIGPAIGPCCYTVDDRVIEGLRSTVPAGSPLPWRETSPGQYALDLKEANRLQLIAAGVPDSHIYVSE
RCTSCEETLFFSHRRDRGTTGRMLAFIGRREETT

Sequences:

>Translated_274_residues
MPDIFQQTAYEWLLCGAPPFAGAVAGITTKQGGESKGSFASLNMGLHVGDDRTAVVNNRRRLAASLVFPLDDWVCCEQVH
GAVIQKVTKSDRGSGAQDFATAVRGADGLYTDESGVLLALCFADCVPVYFMAPSVGLVGLAHAGWRGTAGGIAQNMVRLW
QEREHVAPADVYAAIGPAIGPCCYTVDDRVIEGLRSTVPAGSPLPWRETSPGQYALDLKEANRLQLIAAGVPDSHIYVSE
RCTSCEETLFFSHRRDRGTTGRMLAFIGRREETT
>Mature_273_residues
PDIFQQTAYEWLLCGAPPFAGAVAGITTKQGGESKGSFASLNMGLHVGDDRTAVVNNRRRLAASLVFPLDDWVCCEQVHG
AVIQKVTKSDRGSGAQDFATAVRGADGLYTDESGVLLALCFADCVPVYFMAPSVGLVGLAHAGWRGTAGGIAQNMVRLWQ
EREHVAPADVYAAIGPAIGPCCYTVDDRVIEGLRSTVPAGSPLPWRETSPGQYALDLKEANRLQLIAAGVPDSHIYVSER
CTSCEETLFFSHRRDRGTTGRMLAFIGRREETT

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=226, Percent_Identity=29.646017699115, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI190194372, Length=226, Percent_Identity=29.646017699115, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1788945, Length=250, Percent_Identity=34.8, Blast_Score=120, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 29451; Mature: 29319

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDIFQQTAYEWLLCGAPPFAGAVAGITTKQGGESKGSFASLNMGLHVGDDRTAVVNNRR
CCCHHHHHHHHEEEECCCCHHHHHHCCCCCCCCCCCCCEEEEEECEEECCCCEEECCCHH
RLAASLVFPLDDWVCCEQVHGAVIQKVTKSDRGSGAQDFATAVRGADGLYTDESGVLLAL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCHHHHH
CFADCVPVYFMAPSVGLVGLAHAGWRGTAGGIAQNMVRLWQEREHVAPADVYAAIGPAIG
HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHC
PCCYTVDDRVIEGLRSTVPAGSPLPWRETSPGQYALDLKEANRLQLIAAGVPDSHIYVSE
CEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEHHH
RCTSCEETLFFSHRRDRGTTGRMLAFIGRREETT
HHCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
PDIFQQTAYEWLLCGAPPFAGAVAGITTKQGGESKGSFASLNMGLHVGDDRTAVVNNRR
CCHHHHHHHHEEEECCCCHHHHHHCCCCCCCCCCCCCEEEEEECEEECCCCEEECCCHH
RLAASLVFPLDDWVCCEQVHGAVIQKVTKSDRGSGAQDFATAVRGADGLYTDESGVLLAL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCHHHHH
CFADCVPVYFMAPSVGLVGLAHAGWRGTAGGIAQNMVRLWQEREHVAPADVYAAIGPAIG
HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHC
PCCYTVDDRVIEGLRSTVPAGSPLPWRETSPGQYALDLKEANRLQLIAAGVPDSHIYVSE
CEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEHHH
RCTSCEETLFFSHRRDRGTTGRMLAFIGRREETT
HHCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]