| Definition | Geobacillus thermodenitrificans NG80-2 chromosome, complete genome. |
|---|---|
| Accession | NC_009328 |
| Length | 3,550,319 |
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The map label for this gene is spoVD [H]
Identifier: 138894649
GI number: 138894649
Start: 1045028
End: 1046962
Strand: Direct
Name: spoVD [H]
Synonym: GTNG_0979
Alternate gene names: 138894649
Gene position: 1045028-1046962 (Clockwise)
Preceding gene: 138894648
Following gene: 138894650
Centisome position: 29.43
GC content: 51.32
Gene sequence:
>1935_bases ATGCGCGTGTCGTACGTTACCGTGCGCAAGCGGTTGACGATCGTGTTTTTGATCGGTATTTTCATTTTTGCGATTATCGA TCTCCGTCTTGGTTACGTCCAATTTTGGCTTAGCGATATGTTAACGGAACGGGCGAAAGGGCTATGGGGCCGGAACATCC CGTTTGAACCGAAGCGCGGTGAAATTTTGGATCGCAACGGCGTCCCGCTGGCGACGAATATGAGCGCGCCGACAGTGTAC GTCATCCCCCGGCAAGTGAAAAATCCGGCGGAGGCGGCGGAAAAGCTGTCCGTTGTGTTGGGCGCTTCAGTCGAATCAAT CTATAAGCAAATTACACAAAAAACATCGATCGTCCGTCTAAAGGAAGGGCGAAAAATTTCTGATGAAAAAGCGGCGAGCG TACGCGCACTTGACTTAGATGGGATCTATATCGCTGAAGATACAAAGCGTTACTATCCATTTGGCAGCTATTTGTCGCAT GTGCTTGGCTTTAGCGGCATTGACAATCAGGGGCTCACCGGGCTTGAGCTGTATTATGACAAAGAACTAAGCGGCGAGCG CGGCTCTGTGCAATTTTATTCCGATGCTAAAGGACGACGCATGCCCGGTATAGCGGACGACTATACGCCGCCGACCGACG GCTTGGATTTAGTGCTGACCATTGACTCGCGCATCCAGACGATTATCGAACGGGAGCTTGATATCGCGGAGGCAAAATAC AATCCAGACGGCATCATCGCCATCGCTATGAACCCGAATACGGGCGAAATTTTGGCGATGGCGAGCCGCCCTACTTTCGA CCCAGCCAACTACCGGGACGTCCCTCCGGAAATTTACAACCGCAATTTGCCGATTTGGAGCACATATGAGCCAGGGTCAA CGTTCAAAATCATTACGCTTGCGGCAGCTCTTGAGGAAGGAAAAGTGAATTTGCTCAAAGACCACTTTTTTGACCCGGGC TATGCCAAAGTAGCCGGTGCTACGCTTCGTTGCTGGAAAAAAGGCGGCCACGGAGAGCAAACGTTTTTGGAAGTCGTGCA AAACTCTTGCAACCCAGGGTTTGTAGAGCTGGGAGAACGACTAGGAAAAGAAACGTTGTTTAAGTACATTAAGCAGTTCG GGTTTGGCGAGAAAACCGGCATCGATTTGCAAGGGGAAGGAACCGGAATTTTGTTTGATTTAAAACGGGTAGGGCCGGTT GAGCTGGCGACGACCGCGTTCGGCCAAGGGGTGTCGGTGACGCCGATCCAGCAAGTCGCTGCCGTATCGGCTGCAGTCAA TGGCGGTGTTTTGTACACTCCATACATTGCCAAGGAGTGGATCGACCCAGAAACGGGTGAAATCGTCCGGCGCAATACGC CAAAGGCGAAACGGCGCGTTATTTCCGAGGAAACGTCGAAACAAGTCCGATATGCGCTTGAGAGTGTCGTTGCCCAAGGA ACAGGGAAAAAGGCGTATGTCGAAGGATACCGTGTCGGCGGAAAAACCGGAACGGCGCAAAAAGCGCAAGGAGGCCGCTA TTTGCAAAACAACCATATCGTATCGTTCATCGGTTTCGCTCCGGCTGACGATCCGCAGCTTGTCGTATACGTCGCCGTTG ACAATCCGAAAGGGACGGTTCAGTTTGGCGGTACGGTCGCCGCGCCGATCGTCGGCAAAGTGATGGAAGACAGCCTACGT GTGATGAACGTAAAACCTCGCAAAGATCAACTCGCCAAAGAGCGGGACTGGAACGAGCCGAAAGTGCTGGAAGTACCAAA CTTAATCGGATTGACAAAAAAAGATTTGCAAGAACAACTTTTTGACTTAAAATTAGATGTTAGTGGCGAGGGAGATGTGG TCGTTGAACAATCTCCAGAGCCAGGTGCGAAAGTGAAAGAGGGGTCGACGATTCGCATTTATTTGGCGAAAAACGAGACG GCAGAGGAGCAGTAA
Upstream 100 bases:
>100_bases AACGGAAGGACAACAAGCCGCACGAATGATTTTTGCCGTTCTATAACGGGGCGTACAAGCATATAGTGGAACGAGCCCAT CACGAAGGAGGTTCCGCCAT
Downstream 100 bases:
>100_bases ATGATCGCACAAGGGGCGGCCGATGCGATGATTCATCGGGTTGGTTGTGCCCCTTTTTCCGCTGTCCGCATCGTTGGGCG GGCTATTTATAAGCGAAAGG
Product: stage V sporulation protein D
Products: NA
Alternate protein names: Sporulation-specific penicillin-binding protein [H]
Number of amino acids: Translated: 644; Mature: 644
Protein sequence:
>644_residues MRVSYVTVRKRLTIVFLIGIFIFAIIDLRLGYVQFWLSDMLTERAKGLWGRNIPFEPKRGEILDRNGVPLATNMSAPTVY VIPRQVKNPAEAAEKLSVVLGASVESIYKQITQKTSIVRLKEGRKISDEKAASVRALDLDGIYIAEDTKRYYPFGSYLSH VLGFSGIDNQGLTGLELYYDKELSGERGSVQFYSDAKGRRMPGIADDYTPPTDGLDLVLTIDSRIQTIIERELDIAEAKY NPDGIIAIAMNPNTGEILAMASRPTFDPANYRDVPPEIYNRNLPIWSTYEPGSTFKIITLAAALEEGKVNLLKDHFFDPG YAKVAGATLRCWKKGGHGEQTFLEVVQNSCNPGFVELGERLGKETLFKYIKQFGFGEKTGIDLQGEGTGILFDLKRVGPV ELATTAFGQGVSVTPIQQVAAVSAAVNGGVLYTPYIAKEWIDPETGEIVRRNTPKAKRRVISEETSKQVRYALESVVAQG TGKKAYVEGYRVGGKTGTAQKAQGGRYLQNNHIVSFIGFAPADDPQLVVYVAVDNPKGTVQFGGTVAAPIVGKVMEDSLR VMNVKPRKDQLAKERDWNEPKVLEVPNLIGLTKKDLQEQLFDLKLDVSGEGDVVVEQSPEPGAKVKEGSTIRIYLAKNET AEEQ
Sequences:
>Translated_644_residues MRVSYVTVRKRLTIVFLIGIFIFAIIDLRLGYVQFWLSDMLTERAKGLWGRNIPFEPKRGEILDRNGVPLATNMSAPTVY VIPRQVKNPAEAAEKLSVVLGASVESIYKQITQKTSIVRLKEGRKISDEKAASVRALDLDGIYIAEDTKRYYPFGSYLSH VLGFSGIDNQGLTGLELYYDKELSGERGSVQFYSDAKGRRMPGIADDYTPPTDGLDLVLTIDSRIQTIIERELDIAEAKY NPDGIIAIAMNPNTGEILAMASRPTFDPANYRDVPPEIYNRNLPIWSTYEPGSTFKIITLAAALEEGKVNLLKDHFFDPG YAKVAGATLRCWKKGGHGEQTFLEVVQNSCNPGFVELGERLGKETLFKYIKQFGFGEKTGIDLQGEGTGILFDLKRVGPV ELATTAFGQGVSVTPIQQVAAVSAAVNGGVLYTPYIAKEWIDPETGEIVRRNTPKAKRRVISEETSKQVRYALESVVAQG TGKKAYVEGYRVGGKTGTAQKAQGGRYLQNNHIVSFIGFAPADDPQLVVYVAVDNPKGTVQFGGTVAAPIVGKVMEDSLR VMNVKPRKDQLAKERDWNEPKVLEVPNLIGLTKKDLQEQLFDLKLDVSGEGDVVVEQSPEPGAKVKEGSTIRIYLAKNET AEEQ >Mature_644_residues MRVSYVTVRKRLTIVFLIGIFIFAIIDLRLGYVQFWLSDMLTERAKGLWGRNIPFEPKRGEILDRNGVPLATNMSAPTVY VIPRQVKNPAEAAEKLSVVLGASVESIYKQITQKTSIVRLKEGRKISDEKAASVRALDLDGIYIAEDTKRYYPFGSYLSH VLGFSGIDNQGLTGLELYYDKELSGERGSVQFYSDAKGRRMPGIADDYTPPTDGLDLVLTIDSRIQTIIERELDIAEAKY NPDGIIAIAMNPNTGEILAMASRPTFDPANYRDVPPEIYNRNLPIWSTYEPGSTFKIITLAAALEEGKVNLLKDHFFDPG YAKVAGATLRCWKKGGHGEQTFLEVVQNSCNPGFVELGERLGKETLFKYIKQFGFGEKTGIDLQGEGTGILFDLKRVGPV ELATTAFGQGVSVTPIQQVAAVSAAVNGGVLYTPYIAKEWIDPETGEIVRRNTPKAKRRVISEETSKQVRYALESVVAQG TGKKAYVEGYRVGGKTGTAQKAQGGRYLQNNHIVSFIGFAPADDPQLVVYVAVDNPKGTVQFGGTVAAPIVGKVMEDSLR VMNVKPRKDQLAKERDWNEPKVLEVPNLIGLTKKDLQEQLFDLKLDVSGEGDVVVEQSPEPGAKVKEGSTIRIYLAKNET AEEQ
Specific function: Penicillin-binding protein with an unknown catalytic activity. May have a specialized role in the morphogenesis of spore cortex, which is a modified form of peptidoglycan. Pore cortex formation is determined primarily by the mother cell [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PASTA domain [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=560, Percent_Identity=30.7142857142857, Blast_Score=249, Evalue=4e-67, Organism=Escherichia coli, GI1786854, Length=622, Percent_Identity=26.2057877813505, Blast_Score=163, Evalue=3e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR011927 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 70987; Mature: 70987
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVSYVTVRKRLTIVFLIGIFIFAIIDLRLGYVQFWLSDMLTERAKGLWGRNIPFEPKRG CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC EILDRNGVPLATNMSAPTVYVIPRQVKNPAEAAEKLSVVLGASVESIYKQITQKTSIVRL CEECCCCCCEEECCCCCEEEEECHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEE KEGRKISDEKAASVRALDLDGIYIAEDTKRYYPFGSYLSHVLGFSGIDNQGLTGLELYYD CCCCCCCCCHHCEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC KELSGERGSVQFYSDAKGRRMPGIADDYTPPTDGLDLVLTIDSRIQTIIERELDIAEAKY CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCC NPDGIIAIAMNPNTGEILAMASRPTFDPANYRDVPPEIYNRNLPIWSTYEPGSTFKIITL CCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCEEEEEE AAALEEGKVNLLKDHFFDPGYAKVAGATLRCWKKGGHGEQTFLEVVQNSCNPGFVELGER EEHHCCCCEEHHHHHCCCCCHHHHCCHHHEEHHCCCCCHHHHHHHHHCCCCCCHHHHHHH LGKETLFKYIKQFGFGEKTGIDLQGEGTGILFDLKRVGPVELATTAFGQGVSVTPIQQVA HCHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCEEEHHHHCCCCCCCCHHHHHH AVSAAVNGGVLYTPYIAKEWIDPETGEIVRRNTPKAKRRVISEETSKQVRYALESVVAQG HHHHHHCCCEEECCHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC TGKKAYVEGYRVGGKTGTAQKAQGGRYLQNNHIVSFIGFAPADDPQLVVYVAVDNPKGTV CCCEEEEEEEEECCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCEEEEEEECCCCCEE QFGGTVAAPIVGKVMEDSLRVMNVKPRKDQLAKERDWNEPKVLEVPNLIGLTKKDLQEQL EECCEEHHHHHHHHHHCCHHEEECCCCHHHHHHHCCCCCCCEEECCCHHCCCHHHHHHHH FDLKLDVSGEGDVVVEQSPEPGAKVKEGSTIRIYLAKNETAEEQ HEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCC >Mature Secondary Structure MRVSYVTVRKRLTIVFLIGIFIFAIIDLRLGYVQFWLSDMLTERAKGLWGRNIPFEPKRG CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC EILDRNGVPLATNMSAPTVYVIPRQVKNPAEAAEKLSVVLGASVESIYKQITQKTSIVRL CEECCCCCCEEECCCCCEEEEECHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEE KEGRKISDEKAASVRALDLDGIYIAEDTKRYYPFGSYLSHVLGFSGIDNQGLTGLELYYD CCCCCCCCCHHCEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC KELSGERGSVQFYSDAKGRRMPGIADDYTPPTDGLDLVLTIDSRIQTIIERELDIAEAKY CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCC NPDGIIAIAMNPNTGEILAMASRPTFDPANYRDVPPEIYNRNLPIWSTYEPGSTFKIITL CCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCEEEEEE AAALEEGKVNLLKDHFFDPGYAKVAGATLRCWKKGGHGEQTFLEVVQNSCNPGFVELGER EEHHCCCCEEHHHHHCCCCCHHHHCCHHHEEHHCCCCCHHHHHHHHHCCCCCCHHHHHHH LGKETLFKYIKQFGFGEKTGIDLQGEGTGILFDLKRVGPVELATTAFGQGVSVTPIQQVA HCHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCEEEHHHHCCCCCCCCHHHHHH AVSAAVNGGVLYTPYIAKEWIDPETGEIVRRNTPKAKRRVISEETSKQVRYALESVVAQG HHHHHHCCCEEECCHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC TGKKAYVEGYRVGGKTGTAQKAQGGRYLQNNHIVSFIGFAPADDPQLVVYVAVDNPKGTV CCCEEEEEEEEECCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCEEEEEEECCCCCEE QFGGTVAAPIVGKVMEDSLRVMNVKPRKDQLAKERDWNEPKVLEVPNLIGLTKKDLQEQL EECCEEHHHHHHHHHHCCHHEEECCCCHHHHHHHCCCCCCCEEECCCHHCCCHHHHHHHH FDLKLDVSGEGDVVVEQSPEPGAKVKEGSTIRIYLAKNETAEEQ HEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8289242; 9384377; 8244929; 8436954 [H]