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The map label for this gene is ygaF [H]

Identifier: 138894163

GI number: 138894163

Start: 544239

End: 544715

Strand: Direct

Name: ygaF [H]

Synonym: GTNG_0489

Alternate gene names: 138894163

Gene position: 544239-544715 (Clockwise)

Preceding gene: 138894162

Following gene: 138894164

Centisome position: 15.33

GC content: 47.38

Gene sequence:

>477_bases
ATGATAATTGCCATTGGCCAACCAGCCCCGGATTTCACCTTGCCGGCAAGCAACGGGAAAATGGTTTCGCTTTCAGACTT
CCGAGGCCAATATGTCGTGCTTTATTTTTATCCGAAAGACATGACGCCTGGATGCACGACTGAAGCATGTGACTTTCGTG
ACCGCTATGAGCAGTTTACCGGGTTGAATGCCGTTATCTTAGGGGTAAGCACGGACCCAGTTAAGCGGCATGAAACGTTT
ATTGAGAAATATCAACTGCCGTTTTTGCTTCTTTCCGATGAACAACATCACGTAGCAGAACTATATGGGGTTTGGAAGAA
AAAGCGGAATTTTGGTAAGGAATATATGGGCATTGAGCGCTCGACATTCATTATTGCCCCCGATGGAACGTTGGTAAAGG
AATGGCGCGGGGTGAAAGTAAAAGGACACGTCGATGAGGCGCTTGCGGAAGTTGCCCAATTGGCCTCATCTAGGTAA

Upstream 100 bases:

>100_bases
CGTAGCGCGCACCGTATTTGACTGGGACCGCCGCTAACAGTTGCAATTTTCTTCCCGCTCCGTTACGCTAAAAGAAAATA
AAGCAGACGGAGGGAACGTC

Downstream 100 bases:

>100_bases
GCGTCCAAGCGACATAAACTGTTTTACATATGATACATAGTAACCTCCTCAAATGAATGAAATGTGGTGGGCGGAAAATA
TTTCTGCCCCCTTTTTTTGT

Product: bacterioferritin comigratory protein

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MIIAIGQPAPDFTLPASNGKMVSLSDFRGQYVVLYFYPKDMTPGCTTEACDFRDRYEQFTGLNAVILGVSTDPVKRHETF
IEKYQLPFLLLSDEQHHVAELYGVWKKKRNFGKEYMGIERSTFIIAPDGTLVKEWRGVKVKGHVDEALAEVAQLASSR

Sequences:

>Translated_158_residues
MIIAIGQPAPDFTLPASNGKMVSLSDFRGQYVVLYFYPKDMTPGCTTEACDFRDRYEQFTGLNAVILGVSTDPVKRHETF
IEKYQLPFLLLSDEQHHVAELYGVWKKKRNFGKEYMGIERSTFIIAPDGTLVKEWRGVKVKGHVDEALAEVAQLASSR
>Mature_158_residues
MIIAIGQPAPDFTLPASNGKMVSLSDFRGQYVVLYFYPKDMTPGCTTEACDFRDRYEQFTGLNAVILGVSTDPVKRHETF
IEKYQLPFLLLSDEQHHVAELYGVWKKKRNFGKEYMGIERSTFIIAPDGTLVKEWRGVKVKGHVDEALAEVAQLASSR

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI32189392, Length=155, Percent_Identity=39.3548387096774, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI4505591, Length=157, Percent_Identity=35.6687898089172, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI32455266, Length=157, Percent_Identity=35.6687898089172, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI32455264, Length=157, Percent_Identity=35.6687898089172, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI33188454, Length=82, Percent_Identity=46.3414634146341, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1788825, Length=146, Percent_Identity=44.5205479452055, Blast_Score=133, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI193204376, Length=155, Percent_Identity=37.4193548387097, Blast_Score=86, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI32565831, Length=155, Percent_Identity=38.0645161290323, Blast_Score=86, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6322180, Length=157, Percent_Identity=34.3949044585987, Blast_Score=80, Evalue=1e-16,
Organism=Drosophila melanogaster, GI17738015, Length=157, Percent_Identity=35.6687898089172, Blast_Score=77, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24656348, Length=139, Percent_Identity=34.5323741007194, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17864676, Length=139, Percent_Identity=34.5323741007194, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17879; Mature: 17879

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIAIGQPAPDFTLPASNGKMVSLSDFRGQYVVLYFYPKDMTPGCTTEACDFRDRYEQFT
CEEECCCCCCCCEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHC
GLNAVILGVSTDPVKRHETFIEKYQLPFLLLSDEQHHVAELYGVWKKKRNFGKEYMGIER
CCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCC
STFIIAPDGTLVKEWRGVKVKGHVDEALAEVAQLASSR
CEEEECCCCCEEHHHCCEEEECCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIIAIGQPAPDFTLPASNGKMVSLSDFRGQYVVLYFYPKDMTPGCTTEACDFRDRYEQFT
CEEECCCCCCCCEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHC
GLNAVILGVSTDPVKRHETFIEKYQLPFLLLSDEQHHVAELYGVWKKKRNFGKEYMGIER
CCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCC
STFIIAPDGTLVKEWRGVKVKGHVDEALAEVAQLASSR
CEEEECCCCCEEHHHCCEEEECCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]