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The map label for this gene is yfdE [H]

Identifier: 138894127

GI number: 138894127

Start: 509364

End: 510545

Strand: Reverse

Name: yfdE [H]

Synonym: GTNG_0453

Alternate gene names: 138894127

Gene position: 510545-509364 (Counterclockwise)

Preceding gene: 138894129

Following gene: 138894126

Centisome position: 14.38

GC content: 54.48

Gene sequence:

>1182_bases
ATGGGAGGAGCACTCGATGGTGTGCGTGTGCTCGACTTGTCCCGCGTGTTGGCAGGTCCGTATGCGACGATGATTTTAGG
CGATTTAGGTGCCGATGTCATCAAAGTCGAGGCACCGGGTGGATCGGATGATACCCGGTTTTGGGGACCGCCGTTTAAAA
ACGGCATGAGCGCCTACTATACGGCCGTCAATCGCAACAAGCGGAGCATAACCGCCGATTTAAAAACGGAGGAAGGGCGA
AAAACGGTCTGCCGCTTGGCGGAAACGGCTGATGTTGTCATTCACAACTTCAAAACCGGGACGATGGAAAAATGGGGACT
TGGCTATGAAGAGCTGTCCCGTTTGAATCCTCGCCTCATCTATTGTTCGATCACCGGGTTCGGCGAAACCGGACCGCTCG
CTCCACTTGCCGGCTACGACTACATCATTCAAGCGATGAGCGGCTGGATGAGCATTAATGGCACCCCTGACACCGGCCCG
CTCAAAGTCGGCGTGGCCGTTACAGATGTATTTACTGGCTTGTACGCGGCCATCGCTATTGAAGCGGCATTGCTCGCCCG
TGAAAAAACGGGGTGCGGACAAAAAATCGATCTATCGCTCTTTGACTGCGCTATCGGCGCACTAGTCAATGTTGCCGCTA
ATTACTTATTATCCGGCAACATTCCAAAACCGCTCGGCAATGAACACCCGAACATCGTTCCGTATTCAACATACGAAGCG
AGCGACGGGCCGATCGTCATCGCCGTCGGTAATGACCGACAGTTTCAAGCGCTTTGTTCGTTGTTATCTGATCGTTCGAT
CGGAACTGATCCTCGCTTTCAGACAAATCCGGGCCGCGTTGCCCATCGCGATGAACTCAACCGGCGGCTGAACGAAGAGA
TCAAACAACGGACGAGAGCGGAATGGCAACGCCTTCTTGCTGAAAAAGGCATTCCGTGCGGCCCGGTACAGACGCTAGAT
GAACTGTTTCGCCACCCACAAACGGCAGCGCGTGAAATGATGGTCATCATGCATCATCCGACCGTCGGCTCTCTCCCGCT
TGTCGCCAGCCCGCTCAAGCTATCTGAAACGCCGGTATCCTATCGGCTTCCACCGCCGCTCGCTGGCGAGCATAACAACG
AATCCGATATCGGATGGCGAAACGAACAAACGCTCCAAAGCGACCGAAACGAATCGTCCTGA

Upstream 100 bases:

>100_bases
CGGAATGCCCCCCTCAGTCCGCTTGAGCCGGTTCCTGTTTCGCACATTTGGCAGGGAACCGGCTTTTTGCATGTGAAAGG
GAAAGGAGGAAAAAAACCCG

Downstream 100 bases:

>100_bases
CCAACGCAAGAGACATGGCTTCCCGCAACGGCTCGGCGCCCGCAAGCGCCAAGCAAACGCGGACATATACAATAGATGCA
TAGGAGGAGTAAAACGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MGGALDGVRVLDLSRVLAGPYATMILGDLGADVIKVEAPGGSDDTRFWGPPFKNGMSAYYTAVNRNKRSITADLKTEEGR
KTVCRLAETADVVIHNFKTGTMEKWGLGYEELSRLNPRLIYCSITGFGETGPLAPLAGYDYIIQAMSGWMSINGTPDTGP
LKVGVAVTDVFTGLYAAIAIEAALLAREKTGCGQKIDLSLFDCAIGALVNVAANYLLSGNIPKPLGNEHPNIVPYSTYEA
SDGPIVIAVGNDRQFQALCSLLSDRSIGTDPRFQTNPGRVAHRDELNRRLNEEIKQRTRAEWQRLLAEKGIPCGPVQTLD
ELFRHPQTAAREMMVIMHHPTVGSLPLVASPLKLSETPVSYRLPPPLAGEHNNESDIGWRNEQTLQSDRNESS

Sequences:

>Translated_393_residues
MGGALDGVRVLDLSRVLAGPYATMILGDLGADVIKVEAPGGSDDTRFWGPPFKNGMSAYYTAVNRNKRSITADLKTEEGR
KTVCRLAETADVVIHNFKTGTMEKWGLGYEELSRLNPRLIYCSITGFGETGPLAPLAGYDYIIQAMSGWMSINGTPDTGP
LKVGVAVTDVFTGLYAAIAIEAALLAREKTGCGQKIDLSLFDCAIGALVNVAANYLLSGNIPKPLGNEHPNIVPYSTYEA
SDGPIVIAVGNDRQFQALCSLLSDRSIGTDPRFQTNPGRVAHRDELNRRLNEEIKQRTRAEWQRLLAEKGIPCGPVQTLD
ELFRHPQTAAREMMVIMHHPTVGSLPLVASPLKLSETPVSYRLPPPLAGEHNNESDIGWRNEQTLQSDRNESS
>Mature_392_residues
GGALDGVRVLDLSRVLAGPYATMILGDLGADVIKVEAPGGSDDTRFWGPPFKNGMSAYYTAVNRNKRSITADLKTEEGRK
TVCRLAETADVVIHNFKTGTMEKWGLGYEELSRLNPRLIYCSITGFGETGPLAPLAGYDYIIQAMSGWMSINGTPDTGPL
KVGVAVTDVFTGLYAAIAIEAALLAREKTGCGQKIDLSLFDCAIGALVNVAANYLLSGNIPKPLGNEHPNIVPYSTYEAS
DGPIVIAVGNDRQFQALCSLLSDRSIGTDPRFQTNPGRVAHRDELNRRLNEEIKQRTRAEWQRLLAEKGIPCGPVQTLDE
LFRHPQTAAREMMVIMHHPTVGSLPLVASPLKLSETPVSYRLPPPLAGEHNNESDIGWRNEQTLQSDRNESS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=370, Percent_Identity=43.2432432432432, Blast_Score=327, Evalue=9e-90,
Organism=Homo sapiens, GI300863124, Length=396, Percent_Identity=40.6565656565657, Blast_Score=318, Evalue=6e-87,
Organism=Homo sapiens, GI13376042, Length=396, Percent_Identity=37.6262626262626, Blast_Score=273, Evalue=2e-73,
Organism=Homo sapiens, GI300863126, Length=370, Percent_Identity=37.8378378378378, Blast_Score=270, Evalue=2e-72,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=28.6802030456853, Blast_Score=146, Evalue=4e-35,
Organism=Homo sapiens, GI42794625, Length=394, Percent_Identity=28.6802030456853, Blast_Score=145, Evalue=5e-35,
Organism=Homo sapiens, GI266458393, Length=200, Percent_Identity=37, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458397, Length=200, Percent_Identity=37, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=39.3103448275862, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=39.3103448275862, Blast_Score=104, Evalue=1e-22,
Organism=Escherichia coli, GI87082093, Length=362, Percent_Identity=38.3977900552486, Blast_Score=276, Evalue=2e-75,
Organism=Escherichia coli, GI1788717, Length=420, Percent_Identity=28.5714285714286, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1786222, Length=339, Percent_Identity=27.7286135693215, Blast_Score=107, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI115535051, Length=348, Percent_Identity=28.1609195402299, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=334, Percent_Identity=27.8443113772455, Blast_Score=95, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24648431, Length=372, Percent_Identity=44.6236559139785, Blast_Score=312, Evalue=2e-85,
Organism=Drosophila melanogaster, GI24585488, Length=393, Percent_Identity=29.0076335877863, Blast_Score=123, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42762; Mature: 42631

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGALDGVRVLDLSRVLAGPYATMILGDLGADVIKVEAPGGSDDTRFWGPPFKNGMSAYY
CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCHHHHH
TAVNRNKRSITADLKTEEGRKTVCRLAETADVVIHNFKTGTMEKWGLGYEELSRLNPRLI
HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHCCCHHHHHHCCCEEE
YCSITGFGETGPLAPLAGYDYIIQAMSGWMSINGTPDTGPLKVGVAVTDVFTGLYAAIAI
EEEEECCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCEEECHHHHHHHHHHHHHHHH
EAALLAREKTGCGQKIDLSLFDCAIGALVNVAANYLLSGNIPKPLGNEHPNIVPYSTYEA
HHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
SDGPIVIAVGNDRQFQALCSLLSDRSIGTDPRFQTNPGRVAHRDELNRRLNEEIKQRTRA
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EWQRLLAEKGIPCGPVQTLDELFRHPQTAAREMMVIMHHPTVGSLPLVASPLKLSETPVS
HHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHEEEEEECCCCCCCCCEECCCCCCCCCCC
YRLPPPLAGEHNNESDIGWRNEQTLQSDRNESS
EECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
GGALDGVRVLDLSRVLAGPYATMILGDLGADVIKVEAPGGSDDTRFWGPPFKNGMSAYY
CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCHHHHH
TAVNRNKRSITADLKTEEGRKTVCRLAETADVVIHNFKTGTMEKWGLGYEELSRLNPRLI
HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHCCCHHHHHHCCCEEE
YCSITGFGETGPLAPLAGYDYIIQAMSGWMSINGTPDTGPLKVGVAVTDVFTGLYAAIAI
EEEEECCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCEEECHHHHHHHHHHHHHHHH
EAALLAREKTGCGQKIDLSLFDCAIGALVNVAANYLLSGNIPKPLGNEHPNIVPYSTYEA
HHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
SDGPIVIAVGNDRQFQALCSLLSDRSIGTDPRFQTNPGRVAHRDELNRRLNEEIKQRTRA
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EWQRLLAEKGIPCGPVQTLDELFRHPQTAAREMMVIMHHPTVGSLPLVASPLKLSETPVS
HHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHEEEEEECCCCCCCCCEECCCCCCCCCCC
YRLPPPLAGEHNNESDIGWRNEQTLQSDRNESS
EECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]