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The map label for this gene is liaF [H]

Identifier: 138894114

GI number: 138894114

Start: 492966

End: 493697

Strand: Direct

Name: liaF [H]

Synonym: GTNG_0440

Alternate gene names: 138894114

Gene position: 492966-493697 (Clockwise)

Preceding gene: 138894113

Following gene: 138894115

Centisome position: 13.89

GC content: 46.72

Gene sequence:

>732_bases
ATGCTTGATCAGCAGAAGAAAACCGATTATGTCAGCTGGGCTGTCTTGCTCATCTTTTTGCTTTTTGTTGTCGAAATTGC
ATTTTTCCATCCTGGGTTGCTGTTTTCCATCGGATTAGCGATCGCTTTGCTTTATATCGGAAAACAGTCATGGCCACGCA
AACGGGGGAAAGTGCTTTTTTGGATCGGTGGCATTAGCCTTGTGTTTCATGTGTTTACGATGGTGACGGCCCGGTTGGTC
ATTGTTGCTGGCTTATTTTATGTTCTGTGGAAATTCTTTCAATCCAAGCAGCAACCGACTGTCATTCGGCCAGTCATCAT
TGAAGCGAAGGACAGTCAAGGGGAAGTCATCGACCGAAAGCCGCTGTTTCATAATGTGCTGTTTGGACGGCAAACGACTC
CCGAACATGTGTATGAATGGGATGATGTGAATATTCAAACCGGCATTGGCGATACGGTGATCGATGTCAGTAACACCGTC
TTGCCAAAGGGAGAAGCAGTCATTGTTGTGCGCGGCTTGATCGGTCATGTGCGCGTGCTTGTCCCGTATGAAGTAGAGAC
AAAGGTCGTCCATTCAGCTATCTTTGGTGGGGGAACAGTGTTTGGGCAAGAAGCAAGGCATTTGCTTAACCAAACGCTCA
TTTATCAAACCCCTTCATATCAAGCGGCCGAGAGAAAACTGAAAATTGTCACCTCACTGATGATTGGTCACCTTGAGGTG
AAGCGGTTATGA

Upstream 100 bases:

>100_bases
GCTCAGTTAGAAAAGCAGTTGCAAGAAGGGAAATAACCGGATATGCTAAAGGCGTACATAGTTACGCCTTTTTCATTTTG
GACAACAGGGGGCTCCCCAC

Downstream 100 bases:

>100_bases
GCCGACCGTTGATGGTTTCTGTTTTGTCAGCGCTGATTCTTTTCATTTTGTTATCCCTTTCCTTTGTTTACGTGTTTCCG
CCGGAGACGTGGGCGGAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MLDQQKKTDYVSWAVLLIFLLFVVEIAFFHPGLLFSIGLAIALLYIGKQSWPRKRGKVLFWIGGISLVFHVFTMVTARLV
IVAGLFYVLWKFFQSKQQPTVIRPVIIEAKDSQGEVIDRKPLFHNVLFGRQTTPEHVYEWDDVNIQTGIGDTVIDVSNTV
LPKGEAVIVVRGLIGHVRVLVPYEVETKVVHSAIFGGGTVFGQEARHLLNQTLIYQTPSYQAAERKLKIVTSLMIGHLEV
KRL

Sequences:

>Translated_243_residues
MLDQQKKTDYVSWAVLLIFLLFVVEIAFFHPGLLFSIGLAIALLYIGKQSWPRKRGKVLFWIGGISLVFHVFTMVTARLV
IVAGLFYVLWKFFQSKQQPTVIRPVIIEAKDSQGEVIDRKPLFHNVLFGRQTTPEHVYEWDDVNIQTGIGDTVIDVSNTV
LPKGEAVIVVRGLIGHVRVLVPYEVETKVVHSAIFGGGTVFGQEARHLLNQTLIYQTPSYQAAERKLKIVTSLMIGHLEV
KRL
>Mature_243_residues
MLDQQKKTDYVSWAVLLIFLLFVVEIAFFHPGLLFSIGLAIALLYIGKQSWPRKRGKVLFWIGGISLVFHVFTMVTARLV
IVAGLFYVLWKFFQSKQQPTVIRPVIIEAKDSQGEVIDRKPLFHNVLFGRQTTPEHVYEWDDVNIQTGIGDTVIDVSNTV
LPKGEAVIVVRGLIGHVRVLVPYEVETKVVHSAIFGGGTVFGQEARHLLNQTLIYQTPSYQAAERKLKIVTSLMIGHLEV
KRL

Specific function: Unknown

COG id: COG4758

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016975 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27467; Mature: 27467

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDQQKKTDYVSWAVLLIFLLFVVEIAFFHPGLLFSIGLAIALLYIGKQSWPRKRGKVLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
WIGGISLVFHVFTMVTARLVIVAGLFYVLWKFFQSKQQPTVIRPVIIEAKDSQGEVIDRK
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEECCC
PLFHNVLFGRQTTPEHVYEWDDVNIQTGIGDTVIDVSNTVLPKGEAVIVVRGLIGHVRVL
CHHHHHHCCCCCCHHHCEECCCCEEECCCCCEEEECCCCCCCCCCEEEEEEEHHCCEEEE
VPYEVETKVVHSAIFGGGTVFGQEARHLLNQTLIYQTPSYQAAERKLKIVTSLMIGHLEV
ECCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHE
KRL
ECC
>Mature Secondary Structure
MLDQQKKTDYVSWAVLLIFLLFVVEIAFFHPGLLFSIGLAIALLYIGKQSWPRKRGKVLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
WIGGISLVFHVFTMVTARLVIVAGLFYVLWKFFQSKQQPTVIRPVIIEAKDSQGEVIDRK
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEECCC
PLFHNVLFGRQTTPEHVYEWDDVNIQTGIGDTVIDVSNTVLPKGEAVIVVRGLIGHVRVL
CHHHHHHCCCCCCHHHCEECCCCEEECCCCCEEEECCCCCCCCCCEEEEEEEHHCCEEEE
VPYEVETKVVHSAIFGGGTVFGQEARHLLNQTLIYQTPSYQAAERKLKIVTSLMIGHLEV
ECCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHE
KRL
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 12207695 [H]