Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 138894080

GI number: 138894080

Start: 459223

End: 460113

Strand: Direct

Name: araQ [H]

Synonym: GTNG_0406

Alternate gene names: 138894080

Gene position: 459223-460113 (Clockwise)

Preceding gene: 138894079

Following gene: 138894081

Centisome position: 12.93

GC content: 33.11

Gene sequence:

>891_bases
ATGAGTATGCCTCAATTAGCGCCTAATATACAAGACAAAACGCAAATACGTCAAAAATCTTTATTGCAGAGAAATCGCGA
TTCATATTTATGGATAAAAGTGATCATAGGATTAATAGCAGCAGTTCTTTTTATCCTGCCTGTTATTTGGATGATATTTG
TTTCACTTAAACCAGATGGCTATGTGACAAAAAACCCAGTGGAATGGTTTTTACCTCCATATACTCTGGATAACTATACT
CGCCTTTTAGAAGAAAGCTTAATTCTCAAGTGGACCTGGAATAGTTTCATTGTGGCTTTCATTACTACATTGTTGTCGTT
ATTAGTTACATCATTGGCAGCGTTTGCAATTTCCCGACTGAAATTTCGATATAAAAACTTTATCTTAGTATTCTTTTTGT
TGGGATTAATGATTCCAGGTGAAGCAACTATTATTCCTTTATATGAGGTAGCGAAAAGTTTGGGGTTGATAGATACTTAC
GCTGGTTTAATTTTACCAATGATTGCATCCTCAATGGGCATCATAGTATTAAAAAGTTTTTTTGATAATGTCCCTAAGGA
ATTAATTGAAAGTGCTGTAATTGATGGATGTTCCACTTTTAAACTATTTTATAAAATCATCTTACCTTTATCTAAACCTG
CTATATCAGCAATTGGAATTTTTACATTCATTGGTTCGTGGAATAATTTCTTGTGGCCGTACTTGGCCACATTATCTGAA
GATTTATACACATTGCCAGTTGGTATTCCTGTTTTCAATTCCAATTATTCAACTGCGTATGTATTGCCCATGACAGCTAA
TGCAATTGCTTCAATTCCAGTTATTATCGCATTTCTAATCTTTGAAAAACAAATTGTAAAAGGAATTAGTTTCACAGGTA
TTAAAGGATAA

Upstream 100 bases:

>100_bases
TTTGATGGGGTATGCAGCAACAATGTCCTATGCACTTTTCATGATCTTATTAATTCTATCTATTGTTCAATTAAGGTATC
AAAGAAAGGAGAACTGATAA

Downstream 100 bases:

>100_bases
ACATAGAAAGGAAGAATGGCAGATGAATAATGTCAAAGTCTATAACCGCACTGAATATCCTCGTCCGCAATTTAAACGCA
AGGACTGGTTAAATTTAAAT

Product: putative integral membranebinding-protein-dependent transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSMPQLAPNIQDKTQIRQKSLLQRNRDSYLWIKVIIGLIAAVLFILPVIWMIFVSLKPDGYVTKNPVEWFLPPYTLDNYT
RLLEESLILKWTWNSFIVAFITTLLSLLVTSLAAFAISRLKFRYKNFILVFFLLGLMIPGEATIIPLYEVAKSLGLIDTY
AGLILPMIASSMGIIVLKSFFDNVPKELIESAVIDGCSTFKLFYKIILPLSKPAISAIGIFTFIGSWNNFLWPYLATLSE
DLYTLPVGIPVFNSNYSTAYVLPMTANAIASIPVIIAFLIFEKQIVKGISFTGIKG

Sequences:

>Translated_296_residues
MSMPQLAPNIQDKTQIRQKSLLQRNRDSYLWIKVIIGLIAAVLFILPVIWMIFVSLKPDGYVTKNPVEWFLPPYTLDNYT
RLLEESLILKWTWNSFIVAFITTLLSLLVTSLAAFAISRLKFRYKNFILVFFLLGLMIPGEATIIPLYEVAKSLGLIDTY
AGLILPMIASSMGIIVLKSFFDNVPKELIESAVIDGCSTFKLFYKIILPLSKPAISAIGIFTFIGSWNNFLWPYLATLSE
DLYTLPVGIPVFNSNYSTAYVLPMTANAIASIPVIIAFLIFEKQIVKGISFTGIKG
>Mature_295_residues
SMPQLAPNIQDKTQIRQKSLLQRNRDSYLWIKVIIGLIAAVLFILPVIWMIFVSLKPDGYVTKNPVEWFLPPYTLDNYTR
LLEESLILKWTWNSFIVAFITTLLSLLVTSLAAFAISRLKFRYKNFILVFFLLGLMIPGEATIIPLYEVAKSLGLIDTYA
GLILPMIASSMGIIVLKSFFDNVPKELIESAVIDGCSTFKLFYKIILPLSKPAISAIGIFTFIGSWNNFLWPYLATLSED
LYTLPVGIPVFNSNYSTAYVLPMTANAIASIPVIIAFLIFEKQIVKGISFTGIKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=198, Percent_Identity=36.8686868686869, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787571, Length=187, Percent_Identity=29.9465240641711, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1790464, Length=218, Percent_Identity=26.605504587156, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33256; Mature: 33125

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMPQLAPNIQDKTQIRQKSLLQRNRDSYLWIKVIIGLIAAVLFILPVIWMIFVSLKPDG
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YVTKNPVEWFLPPYTLDNYTRLLEESLILKWTWNSFIVAFITTLLSLLVTSLAAFAISRL
CEECCCHHHCCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFRYKNFILVFFLLGLMIPGEATIIPLYEVAKSLGLIDTYAGLILPMIASSMGIIVLKSF
HHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
FDNVPKELIESAVIDGCSTFKLFYKIILPLSKPAISAIGIFTFIGSWNNFLWPYLATLSE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
DLYTLPVGIPVFNSNYSTAYVLPMTANAIASIPVIIAFLIFEKQIVKGISFTGIKG
CCEEEECCCEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SMPQLAPNIQDKTQIRQKSLLQRNRDSYLWIKVIIGLIAAVLFILPVIWMIFVSLKPDG
CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YVTKNPVEWFLPPYTLDNYTRLLEESLILKWTWNSFIVAFITTLLSLLVTSLAAFAISRL
CEECCCHHHCCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFRYKNFILVFFLLGLMIPGEATIIPLYEVAKSLGLIDTYAGLILPMIASSMGIIVLKSF
HHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
FDNVPKELIESAVIDGCSTFKLFYKIILPLSKPAISAIGIFTFIGSWNNFLWPYLATLSE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
DLYTLPVGIPVFNSNYSTAYVLPMTANAIASIPVIIAFLIFEKQIVKGISFTGIKG
CCEEEECCCEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]