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The map label for this gene is yfkH [H]

Identifier: 138894066

GI number: 138894066

Start: 442173

End: 442994

Strand: Direct

Name: yfkH [H]

Synonym: GTNG_0392

Alternate gene names: 138894066

Gene position: 442173-442994 (Clockwise)

Preceding gene: 138894065

Following gene: 138894069

Centisome position: 12.45

GC content: 50.36

Gene sequence:

>822_bases
ATGATGTTCGTCCGCGAGTTGGCGCGGCGCTTTACAGAGGACGAAATTCCACGGTTGTCAGCGGAACTGGCTTATTACTT
TCTTCTATCGCTGTTTCCGTTTTTGCTGTTTTTAATGACCCTGTTGGCGTATTTGCCTATTCCGCATGAAGATGTGCTCG
CTCTTGTGCGGCAATACGCGCCAAAAGAGGCACTTCATCTCATCGAAACAAATGTGCATCACTTGATGGACGTGCAAAAT
GGGAAACTATTGTCATTAAGCATCATTGGTGCTGTTTGGTCCGCCTCAAACGGGATGCGCGCTATCATGCGGGCGTTCAA
CCGCGCTTATGATGTGGAGGAAAATCGTCCATTTTGGGTGGCGCGCGGATTGTCGGTCGCGCTGACGCTCGGGATGATCG
CCGTGATTATCGTCGCGCTCGTGCTGCCGGTATTCGGACGAACGATCGGGCTGTTTTTGTTTTCTGCTTTAGGGTTATCG
GAACAGTTTTTAACCGTATGGAATGCATTCCGCTGGACGACAAGCTCGCTGTTATTGTTTGCTGTCTTCACCGCCCTTTA
TTATTTCGCCCCGAACAAACAGTTGCGCTGCGTCAATGTCGTGCGCGGCGCCTTATTCGCCACCGCCGGCTGGATTGCGA
CGTCGCTGGCGTTTGCCTATTATGTCAACCATTTTGCCAACTACACAGCCATGTACGGAAGTCTCGGCGGGTTGATCGTC
TTGATGATTTGGCTTTATTTATCCGGCATGATCCTCGTTTTAGGTGGAGAAATGAACGCAATTTTCGATTGTGAACGTGA
AGGGAGAAAGCGGATGCGTTAA

Upstream 100 bases:

>100_bases
ATCCGTGATCATCGGCTTGTTGCGGGCGAATAAAGAGGAGCAAAAAGGGATGCACTCGCTTTGAAAAAACGGGAAAGGAG
GGCAGCCCGTGTTAGTGAAT

Downstream 100 bases:

>100_bases
CGTGCATAAATGGCTCGAAAACCGGATAACGTAACGGTGTGGGGGATTTTCATACAGGGGGGATAACGATGGCTAAGCAT
ACGAAAAAAGACGGGGGAAC

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MMFVRELARRFTEDEIPRLSAELAYYFLLSLFPFLLFLMTLLAYLPIPHEDVLALVRQYAPKEALHLIETNVHHLMDVQN
GKLLSLSIIGAVWSASNGMRAIMRAFNRAYDVEENRPFWVARGLSVALTLGMIAVIIVALVLPVFGRTIGLFLFSALGLS
EQFLTVWNAFRWTTSSLLLFAVFTALYYFAPNKQLRCVNVVRGALFATAGWIATSLAFAYYVNHFANYTAMYGSLGGLIV
LMIWLYLSGMILVLGGEMNAIFDCEREGRKRMR

Sequences:

>Translated_273_residues
MMFVRELARRFTEDEIPRLSAELAYYFLLSLFPFLLFLMTLLAYLPIPHEDVLALVRQYAPKEALHLIETNVHHLMDVQN
GKLLSLSIIGAVWSASNGMRAIMRAFNRAYDVEENRPFWVARGLSVALTLGMIAVIIVALVLPVFGRTIGLFLFSALGLS
EQFLTVWNAFRWTTSSLLLFAVFTALYYFAPNKQLRCVNVVRGALFATAGWIATSLAFAYYVNHFANYTAMYGSLGGLIV
LMIWLYLSGMILVLGGEMNAIFDCEREGRKRMR
>Mature_273_residues
MMFVRELARRFTEDEIPRLSAELAYYFLLSLFPFLLFLMTLLAYLPIPHEDVLALVRQYAPKEALHLIETNVHHLMDVQN
GKLLSLSIIGAVWSASNGMRAIMRAFNRAYDVEENRPFWVARGLSVALTLGMIAVIIVALVLPVFGRTIGLFLFSALGLS
EQFLTVWNAFRWTTSSLLLFAVFTALYYFAPNKQLRCVNVVRGALFATAGWIATSLAFAYYVNHFANYTAMYGSLGGLIV
LMIWLYLSGMILVLGGEMNAIFDCEREGRKRMR

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 30919; Mature: 30919

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFVRELARRFTEDEIPRLSAELAYYFLLSLFPFLLFLMTLLAYLPIPHEDVLALVRQYA
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
PKEALHLIETNVHHLMDVQNGKLLSLSIIGAVWSASNGMRAIMRAFNRAYDVEENRPFWV
CHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEE
ARGLSVALTLGMIAVIIVALVLPVFGRTIGLFLFSALGLSEQFLTVWNAFRWTTSSLLLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AVFTALYYFAPNKQLRCVNVVRGALFATAGWIATSLAFAYYVNHFANYTAMYGSLGGLIV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMIWLYLSGMILVLGGEMNAIFDCEREGRKRMR
HHHHHHHCCHHEEECCCCCHHHCCCHHHHHCCC
>Mature Secondary Structure
MMFVRELARRFTEDEIPRLSAELAYYFLLSLFPFLLFLMTLLAYLPIPHEDVLALVRQYA
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
PKEALHLIETNVHHLMDVQNGKLLSLSIIGAVWSASNGMRAIMRAFNRAYDVEENRPFWV
CHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEE
ARGLSVALTLGMIAVIIVALVLPVFGRTIGLFLFSALGLSEQFLTVWNAFRWTTSSLLLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AVFTALYYFAPNKQLRCVNVVRGALFATAGWIATSLAFAYYVNHFANYTAMYGSLGGLIV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMIWLYLSGMILVLGGEMNAIFDCEREGRKRMR
HHHHHHHCCHHEEECCCCCHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]