Click here to switch to the map view.

The map label for this gene is lutC

Identifier: 138894040

GI number: 138894040

Start: 416308

End: 417030

Strand: Reverse

Name: lutC

Synonym: GTNG_0366

Alternate gene names: 138894040

Gene position: 417030-416308 (Counterclockwise)

Preceding gene: 138894041

Following gene: 138894034

Centisome position: 11.75

GC content: 54.22

Gene sequence:

>723_bases
ATGACGCGTGGTACGATTCAAAACCGTGACGCGTTTTTACAAAATATCGCCAAACGCCTTGGGAGAAGCCCGCGCCTGTC
CGGCGTCTCCCAACCACAATGGGATTATGCGCCGCAATGGACAGTGTTCGCCGGCTATAGCCAGGACGACTTATTGTCAG
CACTCCGTGAACAGTGCAAACTGATTCATACGGATTATATCGAGACGACAAGCAGCGAACTGGCCGGTGCACTCAAACAA
CAAGTGGCGGCCTATGGTGGCGGTCCAGTCATCGTTCCCGATGACCCGCGCTTTGCCGAGTACGGGCTATCCGCCTTGCT
TCACGACGAATGGCCAGCCGAACAAACCGCCGTTCACGTTTGGAATTCGTCGCTTGGGCGCCAAAATATTGATGCGGCTG
AACAGGCAAACGTCGGCATCGCTTTTAGCGAAATCACCCTCGCCGAATCGGGGACGGTCGTGTTGTTTTCCCGTAATGAG
CAAGGACGGACCATTCACTTTTTGCCAAAGACGTATATCGCCATCGTTCCAAAAAGCTCTGTCGTGCCGCGCATGACGCA
AGCTGCAGCCTACATTCACGAGCAAATCGAAAAAGGCGCCGTCGTTCCATCATGCATCAACTTCATCACCGGCCCGAGCA
ATTCAGCCGACATTGAAATGAACTTGGTCGTTGGCGTCCACGGGCCAATGAAAGCGGCGTATATCGTCGTCACCGACCGT
TGA

Upstream 100 bases:

>100_bases
GCCCGCTGAAAGCATGGACGGAAAGCCGCGTGTTTCCCGCACCGAACAACGAACGATTCCGTGACTGGTTCCGCAATCGT
CAAAAAGGAGGAAATCCATC

Downstream 100 bases:

>100_bases
CCAAAACGAAACGGTGCCCCTTTTGAATCGGGCACCGTTCTTTCCTTCAATATTGTCGGCTGACATCGACCACATTGTTA
AGCGGTGTACCCGCTTCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MTRGTIQNRDAFLQNIAKRLGRSPRLSGVSQPQWDYAPQWTVFAGYSQDDLLSALREQCKLIHTDYIETTSSELAGALKQ
QVAAYGGGPVIVPDDPRFAEYGLSALLHDEWPAEQTAVHVWNSSLGRQNIDAAEQANVGIAFSEITLAESGTVVLFSRNE
QGRTIHFLPKTYIAIVPKSSVVPRMTQAAAYIHEQIEKGAVVPSCINFITGPSNSADIEMNLVVGVHGPMKAAYIVVTDR

Sequences:

>Translated_240_residues
MTRGTIQNRDAFLQNIAKRLGRSPRLSGVSQPQWDYAPQWTVFAGYSQDDLLSALREQCKLIHTDYIETTSSELAGALKQ
QVAAYGGGPVIVPDDPRFAEYGLSALLHDEWPAEQTAVHVWNSSLGRQNIDAAEQANVGIAFSEITLAESGTVVLFSRNE
QGRTIHFLPKTYIAIVPKSSVVPRMTQAAAYIHEQIEKGAVVPSCINFITGPSNSADIEMNLVVGVHGPMKAAYIVVTDR
>Mature_239_residues
TRGTIQNRDAFLQNIAKRLGRSPRLSGVSQPQWDYAPQWTVFAGYSQDDLLSALREQCKLIHTDYIETTSSELAGALKQQ
VAAYGGGPVIVPDDPRFAEYGLSALLHDEWPAEQTAVHVWNSSLGRQNIDAAEQANVGIAFSEITLAESGTVVLFSRNEQ
GRTIHFLPKTYIAIVPKSSVVPRMTQAAAYIHEQIEKGAVVPSCINFITGPSNSADIEMNLVVGVHGPMKAAYIVVTDR

Specific function: Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source

COG id: COG1556

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lutC/ykgG family

Homologues:

Organism=Escherichia coli, GI87081718, Length=250, Percent_Identity=36.8, Blast_Score=158, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LUTC_GEOTN (A4IK94)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001124493.1
- ProteinModelPortal:   A4IK94
- STRING:   A4IK94
- GeneID:   4965310
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_0366
- NMPDR:   fig|420246.5.peg.351
- eggNOG:   COG1556
- HOGENOM:   HBG729575
- OMA:   SCVNIIS
- PhylomeDB:   A4IK94
- ProtClustDB:   CLSK2503355
- BioCyc:   GTHE420246:GTNG_0366-MONOMER
- HAMAP:   MF_02104
- InterPro:   IPR003741
- InterPro:   IPR002698
- InterPro:   IPR022823
- Gene3D:   G3DSA:3.40.50.10420

Pfam domain/function: PF02589 DUF162

EC number: NA

Molecular weight: Translated: 26211; Mature: 26080

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRGTIQNRDAFLQNIAKRLGRSPRLSGVSQPQWDYAPQWTVFAGYSQDDLLSALREQCK
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
LIHTDYIETTSSELAGALKQQVAAYGGGPVIVPDDPRFAEYGLSALLHDEWPAEQTAVHV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCHHHEEEE
WNSSLGRQNIDAAEQANVGIAFSEITLAESGTVVLFSRNEQGRTIHFLPKTYIAIVPKSS
CCCCCCCCCCCHHHHCCCCEEEEEEEEECCCEEEEEECCCCCCEEEEECCEEEEEECCCC
VVPRMTQAAAYIHEQIEKGAVVPSCINFITGPSNSADIEMNLVVGVHGPMKAAYIVVTDR
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEECC
>Mature Secondary Structure 
TRGTIQNRDAFLQNIAKRLGRSPRLSGVSQPQWDYAPQWTVFAGYSQDDLLSALREQCK
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
LIHTDYIETTSSELAGALKQQVAAYGGGPVIVPDDPRFAEYGLSALLHDEWPAEQTAVHV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCHHHEEEE
WNSSLGRQNIDAAEQANVGIAFSEITLAESGTVVLFSRNEQGRTIHFLPKTYIAIVPKSS
CCCCCCCCCCCHHHHCCCCEEEEEEEEECCCEEEEEECCCCCCEEEEECCEEEEEECCCC
VVPRMTQAAAYIHEQIEKGAVVPSCINFITGPSNSADIEMNLVVGVHGPMKAAYIVVTDR
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA