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The map label for this gene is ydhD [H]

Identifier: 138894037

GI number: 138894037

Start: 413045

End: 414307

Strand: Direct

Name: ydhD [H]

Synonym: GTNG_0363

Alternate gene names: 138894037

Gene position: 413045-414307 (Clockwise)

Preceding gene: 138894036

Following gene: 138894038

Centisome position: 11.63

GC content: 51.62

Gene sequence:

>1263_bases
ATGTTTACTCATACAGTCCAGCCGGGGGATACGCTGTTTTCCATCGGCCGCCGGTACGGTTATTCATTGGAAGATCTTCG
TCTTGTCAACGGGATGGTGGAACCGAACATCGTCCCTGGCCAGGCGTTGCTCATCCCACTTTACACCTATACGGTGCAAC
CAGGGGACACGCTGACAGCCATTGCCCGGCGGTCGTTTGTCACGCTTGAACAATTGCGTGCGGCCAATCCTAATGTCAAT
CCAAATGCCCTGCGCCCAGGAATGAAAATCGTCATTCCCGATATCTCATGGTATCAGGCGACGACGTTCGGCTACTACGT
CGTTCGCGAACCGAGTGCCGACAGGGCGATTATTCGTGATTTTGCTCCGTATTCATCGTATATCACCCTTTTTGAATATC
ACTTTGCCCCAAGCGGCGATATAGTGAATGAATTGAATGATGCGGCTGCTGTTGAGGAAGCATGGCGAAACCGGGTGACG
CCGCTTGTTGCCATCACGAATTTAACGCCGGAGGGGTTCAGCCCAACGCTTGTCAGCCAAGTGTTGAACAATCGAGAGGC
TAGGGCGAACCTCGTTGAAAACATTTTTTATTTAGTGTCGCGAAAAGGATATGGTGGGGTCAATATTGATTTTGAGCAAA
TTCGTGGCGAAGACCGCGATTTGTTCACTGGTTTTCTGCGCCAGCTGCGCGATCGGCTCAAGCCGGCTGGATACGTCGTA
ACGATCGCTGTTCCAGCGAAAACAAGCGAAGACATTCCATGGCTAAAGGGGTACGATTATGGCGGCATTGGCACGGTTGT
TGATTATATGTTTATTATGGCATACGATTGGCACCATTCGGCAAGCGAGCCTGGCCCGGTGGCACCGATTGGTGGGGTGA
GGGCGACGTTGCAGTTTGCTGTTGAGCGTGTCCCCCGCCAAAAAATTTTGCTAGGGCTCCCGCTGTACGGATATGACTGG
ATCATCCCGTATCAGCCTGGAATGCTCGCTACAGCGCGTTCCAACCAGGAAGCACTGCTTACGGCCATGCGCTATCAATC
CCCTATTCAGTATTCATTGGCGGATGAATCCCCATTTTTCCGGTATACCGATGCACTCGGAAACGTTCACGAAGTATGGT
TTGAAGATGTTCGAAGCATGGGACAGAAAATGAAGTTGGCTCGGCAATTTCAACTTGCCGGCGTTGGAGCATGGCAGCTC
ACACTTGGATTTGCCCCAGGGCCGTGGCTGCTGCGTAAGTTTTTTACGGTTCGAAAAGTTTGA

Upstream 100 bases:

>100_bases
AAACAAGTCATAGGACAACATACGTCCTCCGGTTTGGAGCATATAGTAAAGGATATCGTCAGCCATTTTTCGCATCTAGT
CATAATGGAGGCGATACAAA

Downstream 100 bases:

>100_bases
TTTGATGGTCTAGCACCGCCAAGCCAGTGAAAATGATAGAAGGCTGGCAGTGCATATATCTTTGTCACTTTGAATCAACT
TTTCTCGCTTTCTTGGCAAA

Product: hypothetical protein

Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MFTHTVQPGDTLFSIGRRYGYSLEDLRLVNGMVEPNIVPGQALLIPLYTYTVQPGDTLTAIARRSFVTLEQLRAANPNVN
PNALRPGMKIVIPDISWYQATTFGYYVVREPSADRAIIRDFAPYSSYITLFEYHFAPSGDIVNELNDAAAVEEAWRNRVT
PLVAITNLTPEGFSPTLVSQVLNNREARANLVENIFYLVSRKGYGGVNIDFEQIRGEDRDLFTGFLRQLRDRLKPAGYVV
TIAVPAKTSEDIPWLKGYDYGGIGTVVDYMFIMAYDWHHSASEPGPVAPIGGVRATLQFAVERVPRQKILLGLPLYGYDW
IIPYQPGMLATARSNQEALLTAMRYQSPIQYSLADESPFFRYTDALGNVHEVWFEDVRSMGQKMKLARQFQLAGVGAWQL
TLGFAPGPWLLRKFFTVRKV

Sequences:

>Translated_420_residues
MFTHTVQPGDTLFSIGRRYGYSLEDLRLVNGMVEPNIVPGQALLIPLYTYTVQPGDTLTAIARRSFVTLEQLRAANPNVN
PNALRPGMKIVIPDISWYQATTFGYYVVREPSADRAIIRDFAPYSSYITLFEYHFAPSGDIVNELNDAAAVEEAWRNRVT
PLVAITNLTPEGFSPTLVSQVLNNREARANLVENIFYLVSRKGYGGVNIDFEQIRGEDRDLFTGFLRQLRDRLKPAGYVV
TIAVPAKTSEDIPWLKGYDYGGIGTVVDYMFIMAYDWHHSASEPGPVAPIGGVRATLQFAVERVPRQKILLGLPLYGYDW
IIPYQPGMLATARSNQEALLTAMRYQSPIQYSLADESPFFRYTDALGNVHEVWFEDVRSMGQKMKLARQFQLAGVGAWQL
TLGFAPGPWLLRKFFTVRKV
>Mature_420_residues
MFTHTVQPGDTLFSIGRRYGYSLEDLRLVNGMVEPNIVPGQALLIPLYTYTVQPGDTLTAIARRSFVTLEQLRAANPNVN
PNALRPGMKIVIPDISWYQATTFGYYVVREPSADRAIIRDFAPYSSYITLFEYHFAPSGDIVNELNDAAAVEEAWRNRVT
PLVAITNLTPEGFSPTLVSQVLNNREARANLVENIFYLVSRKGYGGVNIDFEQIRGEDRDLFTGFLRQLRDRLKPAGYVV
TIAVPAKTSEDIPWLKGYDYGGIGTVVDYMFIMAYDWHHSASEPGPVAPIGGVRATLQFAVERVPRQKILLGLPLYGYDW
IIPYQPGMLATARSNQEALLTAMRYQSPIQYSLADESPFFRYTDALGNVHEVWFEDVRSMGQKMKLARQFQLAGVGAWQL
TLGFAPGPWLLRKFFTVRKV

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

Organism=Homo sapiens, GI4758092, Length=238, Percent_Identity=24.7899159663866, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI218083215, Length=281, Percent_Identity=23.1316725978648, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI218083182, Length=281, Percent_Identity=23.1316725978648, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI218083142, Length=281, Percent_Identity=23.1316725978648, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI218083233, Length=281, Percent_Identity=24.1992882562278, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 47312; Mature: 47312

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTHTVQPGDTLFSIGRRYGYSLEDLRLVNGMVEPNIVPGQALLIPLYTYTVQPGDTLTA
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCHHHH
IARRSFVTLEQLRAANPNVNPNALRPGMKIVIPDISWYQATTFGYYVVREPSADRAIIRD
HHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEECCCCCEEEEEEEEEEEECCCCCHHHHHH
FAPYSSYITLFEYHFAPSGDIVNELNDAAAVEEAWRNRVTPLVAITNLTPEGFSPTLVSQ
CCCCHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH
VLNNREARANLVENIFYLVSRKGYGGVNIDFEQIRGEDRDLFTGFLRQLRDRLKPAGYVV
HHCCCHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCCCHHHHHHHHHHHHHHCCCCCEEE
TIAVPAKTSEDIPWLKGYDYGGIGTVVDYMFIMAYDWHHSASEPGPVAPIGGVRATLQFA
EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHH
VERVPRQKILLGLPLYGYDWIIPYQPGMLATARSNQEALLTAMRYQSPIQYSLADESPFF
HHHCCHHHEEEECCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCC
RYTDALGNVHEVWFEDVRSMGQKMKLARQFQLAGVGAWQLTLGFAPGPWLLRKFFTVRKV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFTHTVQPGDTLFSIGRRYGYSLEDLRLVNGMVEPNIVPGQALLIPLYTYTVQPGDTLTA
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCHHHH
IARRSFVTLEQLRAANPNVNPNALRPGMKIVIPDISWYQATTFGYYVVREPSADRAIIRD
HHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEECCCCCEEEEEEEEEEEECCCCCHHHHHH
FAPYSSYITLFEYHFAPSGDIVNELNDAAAVEEAWRNRVTPLVAITNLTPEGFSPTLVSQ
CCCCHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH
VLNNREARANLVENIFYLVSRKGYGGVNIDFEQIRGEDRDLFTGFLRQLRDRLKPAGYVV
HHCCCHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCCCHHHHHHHHHHHHHHCCCCCEEE
TIAVPAKTSEDIPWLKGYDYGGIGTVVDYMFIMAYDWHHSASEPGPVAPIGGVRATLQFA
EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHH
VERVPRQKILLGLPLYGYDWIIPYQPGMLATARSNQEALLTAMRYQSPIQYSLADESPFF
HHHCCHHHEEEECCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCC
RYTDALGNVHEVWFEDVRSMGQKMKLARQFQLAGVGAWQLTLGFAPGPWLLRKFFTVRKV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]