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The map label for this gene is ydcI [H]

Identifier: 138893885

GI number: 138893885

Start: 221587

End: 223752

Strand: Direct

Name: ydcI [H]

Synonym: GTNG_0209

Alternate gene names: 138893885

Gene position: 221587-223752 (Clockwise)

Preceding gene: 138893884

Following gene: 138893886

Centisome position: 6.24

GC content: 51.2

Gene sequence:

>2166_bases
TTGACGAACGAACAGCGGCTCATTTCAATCATTGCCACCGAGCAACAGTTGACAGTGAAACAAGTTAAAAACGTCATCTC
GCTTCATCAAGAAGGCAACACGATCCCGTTTATTGCTCGCTACCGGAAAGAAATGACGGGGGCGCTCGATGAAGTGCAAA
TCCGTGATGTGCTCGAACGATGGGAATATTTGCAACATTTAGAGCGACGGAAAGAAGAAGTTATTCGGCTGGTTGAGGAA
CAAGGAAAATTGACCGAAGAATTGAAAAACGCGATTATAAGCGCTACGAAACTGCAGCAAGTCGAAGATCTCTACCGCCC
ATATCGGCAAAAACGGCGTACAAAAGCGACGATCGCGAAAGAAAAAGGGCTTGAGCCGCTTGCTGATTGGCTTCTTTCTT
GTCCCACCGCCCCATCCCCTAATGAACAGGCTAAGGCATTCATCGATGACGAAAAAGGAGTGGCCACTGTTGACGAGGCG
TTGCAAGGGGCGAAAGACATCATCGCCGAACGAGTGGCCGACGATGCCACCCTTCGCCAATGGGTGCGCGAACAAACGTG
GCGAAAAGGAACGATCGCTTCGACCGCCAAAGCACCAGAAAAAGACGAAAAGAATGTGTACGAAATGTATTATGACTATG
AAGAACCGATCGCCAAAATCGTTCCTCATCGCGTCTTGGCCTTAAACCGCGGTGAAAAGGAAGAGGTGCTACGTGTTTCC
GTCAAGGCGCCAGTGGAAGACATCGTTCGCTATTTGCAGCGAAAAACAGTCACGAATGAATTATCCCCTGCCGCCACGCT
TGTGGCCGAAGCGGTTGAAGACGGGTACAAGCGGTTGATGGAGCCTGCCATTGAACGCGAGATTCGCAACGAGTTGACGG
AAAAAGCAGAAGAACGAGCGATTCATATTTTTGCTGAAAACTTGCGCAAACTGCTTCTTCAGCCACCGCTAAAAGGAAAA
ACGGTACTCGGCATCGACCCAGCTTATCGAACCGGATGCAAACTCGCTGTTGTGGATGAAACGGGGAAGCTGCTCCGCAT
TGACGTCATTTACCCGCACCCGCCCCAAGAACGGAAAGAAGAAGCACGAGCAAAGCTTCTACGCTTGCTCGATGACTATC
ACGTCGACATGATCGCCATCGGCAACGGAACGGCATCAAGGGAAACGGAGCAGTTTGTCGCCGATACGTTAAAGCAAGTG
GAACGCGACATTTTTTATGTCATTGTTAATGAAGCTGGAGCGAGTGTCTACTCAGCATCCGACCTGGCGCGCGCCGAGTT
TCCGGATTTGCAAGTCGAAGAGCGGAGCGCTGTTTCCATCGCCCGTCGTGTTCAAGACCCGCTCGCTGAGCTCGTCAAAA
TCGATCCGAAATCGGTGGGTGTCGGTCAGTACCAACACGATGTATCGCAAAAGAAACTGGCTGAATCGCTCCGTTTTGTC
GTCGAGACGGTCGTTAACCAAGTTGGTGTCAACGTGAACACTGCCTCTGTCTCTTTATTGCAGTACGTGTCAGGGTTGAC
GAAAACGGTATCGGAAAACATCGTCAAGCGCCGTGAAGAGCAAGGAAAATTCCGCAGCCGCGACGAGCTGAAAACGATCC
CGCGCCTTGGGGCAAAAACGTACGAGCAATGTATCGGATTTTTGCGCATTCTTGACGGGGAAGAGCCGCTTGACCGAACG
CCGATTCACCCTGAGCGATACGCGGAAGTGAAGCGTCTATTGCAGACATTAGGATTTACAACCGACGCCATTGGCAGCGA
TGAACTGCGCCAAGCGCTGCAAGCCCTCGATATCGAAGCAACGGCAGCTGAGCTCGGCATTGGTGAGCTCACATTGCGCG
ACATCATCGATGCTTTATGCCGTCCGGAGCGCGATCCGCGCGACGAGCTGCCCAAACCTTTGCTTCGTAAAGATGTCTTG
AAAATGGAAGACTTAAAACCAGGCATGGAGCTTGAAGGCACGGTACGCAATGTCGTCGATTTCGGCGCTTTTGTTGACAT
CGGTGTCAAACAGGATGGGCTTGTGCACATTTCGAAACTAAGCAAACAATACGTGCGTCATCCGCTCGATATTGTTTCCG
TCGGTGATGTCGTCAAAGTATGGGTCGAGCACGTCGACGTGGCGAAAGGAAGAATTTCGTTATCAATGGTTTCCCCCGAA
GAGTGA

Upstream 100 bases:

>100_bases
AAGTAGCTCTTTTTTTTGTCATCTCGAACCGAAAAGCGCCCATTCTCAGTATGACCGTAGGCAGGAGAGCGTTCAAGCAT
ATATTAAGGGAGGGAAACGA

Downstream 100 bases:

>100_bases
AGGAAAAAGCACTGCCTTACGAGCAGTGCTTTTTTCGATAAAAAAACCAACATTGGTTTAACAGCTTGATTTGATCGCGG
TTTTTCTCATAATAGGCTCG

Product: S1 RNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 721; Mature: 720

Protein sequence:

>721_residues
MTNEQRLISIIATEQQLTVKQVKNVISLHQEGNTIPFIARYRKEMTGALDEVQIRDVLERWEYLQHLERRKEEVIRLVEE
QGKLTEELKNAIISATKLQQVEDLYRPYRQKRRTKATIAKEKGLEPLADWLLSCPTAPSPNEQAKAFIDDEKGVATVDEA
LQGAKDIIAERVADDATLRQWVREQTWRKGTIASTAKAPEKDEKNVYEMYYDYEEPIAKIVPHRVLALNRGEKEEVLRVS
VKAPVEDIVRYLQRKTVTNELSPAATLVAEAVEDGYKRLMEPAIEREIRNELTEKAEERAIHIFAENLRKLLLQPPLKGK
TVLGIDPAYRTGCKLAVVDETGKLLRIDVIYPHPPQERKEEARAKLLRLLDDYHVDMIAIGNGTASRETEQFVADTLKQV
ERDIFYVIVNEAGASVYSASDLARAEFPDLQVEERSAVSIARRVQDPLAELVKIDPKSVGVGQYQHDVSQKKLAESLRFV
VETVVNQVGVNVNTASVSLLQYVSGLTKTVSENIVKRREEQGKFRSRDELKTIPRLGAKTYEQCIGFLRILDGEEPLDRT
PIHPERYAEVKRLLQTLGFTTDAIGSDELRQALQALDIEATAAELGIGELTLRDIIDALCRPERDPRDELPKPLLRKDVL
KMEDLKPGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDVAKGRISLSMVSPE
E

Sequences:

>Translated_721_residues
MTNEQRLISIIATEQQLTVKQVKNVISLHQEGNTIPFIARYRKEMTGALDEVQIRDVLERWEYLQHLERRKEEVIRLVEE
QGKLTEELKNAIISATKLQQVEDLYRPYRQKRRTKATIAKEKGLEPLADWLLSCPTAPSPNEQAKAFIDDEKGVATVDEA
LQGAKDIIAERVADDATLRQWVREQTWRKGTIASTAKAPEKDEKNVYEMYYDYEEPIAKIVPHRVLALNRGEKEEVLRVS
VKAPVEDIVRYLQRKTVTNELSPAATLVAEAVEDGYKRLMEPAIEREIRNELTEKAEERAIHIFAENLRKLLLQPPLKGK
TVLGIDPAYRTGCKLAVVDETGKLLRIDVIYPHPPQERKEEARAKLLRLLDDYHVDMIAIGNGTASRETEQFVADTLKQV
ERDIFYVIVNEAGASVYSASDLARAEFPDLQVEERSAVSIARRVQDPLAELVKIDPKSVGVGQYQHDVSQKKLAESLRFV
VETVVNQVGVNVNTASVSLLQYVSGLTKTVSENIVKRREEQGKFRSRDELKTIPRLGAKTYEQCIGFLRILDGEEPLDRT
PIHPERYAEVKRLLQTLGFTTDAIGSDELRQALQALDIEATAAELGIGELTLRDIIDALCRPERDPRDELPKPLLRKDVL
KMEDLKPGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDVAKGRISLSMVSPE
E
>Mature_720_residues
TNEQRLISIIATEQQLTVKQVKNVISLHQEGNTIPFIARYRKEMTGALDEVQIRDVLERWEYLQHLERRKEEVIRLVEEQ
GKLTEELKNAIISATKLQQVEDLYRPYRQKRRTKATIAKEKGLEPLADWLLSCPTAPSPNEQAKAFIDDEKGVATVDEAL
QGAKDIIAERVADDATLRQWVREQTWRKGTIASTAKAPEKDEKNVYEMYYDYEEPIAKIVPHRVLALNRGEKEEVLRVSV
KAPVEDIVRYLQRKTVTNELSPAATLVAEAVEDGYKRLMEPAIEREIRNELTEKAEERAIHIFAENLRKLLLQPPLKGKT
VLGIDPAYRTGCKLAVVDETGKLLRIDVIYPHPPQERKEEARAKLLRLLDDYHVDMIAIGNGTASRETEQFVADTLKQVE
RDIFYVIVNEAGASVYSASDLARAEFPDLQVEERSAVSIARRVQDPLAELVKIDPKSVGVGQYQHDVSQKKLAESLRFVV
ETVVNQVGVNVNTASVSLLQYVSGLTKTVSENIVKRREEQGKFRSRDELKTIPRLGAKTYEQCIGFLRILDGEEPLDRTP
IHPERYAEVKRLLQTLGFTTDAIGSDELRQALQALDIEATAAELGIGELTLRDIIDALCRPERDPRDELPKPLLRKDVLK
MEDLKPGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDVAKGRISLSMVSPEE

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=771, Percent_Identity=36.0570687418936, Blast_Score=437, Evalue=1e-122,
Organism=Homo sapiens, GI27597090, Length=578, Percent_Identity=24.5674740484429, Blast_Score=97, Evalue=6e-20,
Organism=Escherichia coli, GI87082262, Length=728, Percent_Identity=47.1153846153846, Blast_Score=595, Evalue=1e-171,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=45.3333333333333, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=756, Percent_Identity=31.6137566137566, Blast_Score=278, Evalue=7e-75,
Organism=Caenorhabditis elegans, GI17552892, Length=310, Percent_Identity=27.741935483871, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI62484314, Length=755, Percent_Identity=33.2450331125828, Blast_Score=402, Evalue=1e-112,
Organism=Drosophila melanogaster, GI24640080, Length=587, Percent_Identity=25.3833049403748, Blast_Score=102, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81622; Mature: 81491

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNEQRLISIIATEQQLTVKQVKNVISLHQEGNTIPFIARYRKEMTGALDEVQIRDVLER
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
WEYLQHLERRKEEVIRLVEEQGKLTEELKNAIISATKLQQVEDLYRPYRQKRRTKATIAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKGLEPLADWLLSCPTAPSPNEQAKAFIDDEKGVATVDEALQGAKDIIAERVADDATLRQ
HCCCCHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
WVREQTWRKGTIASTAKAPEKDEKNVYEMYYDYEEPIAKIVPHRVLALNRGEKEEVLRVS
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHCCHHHHHCCCCCHHHHHHHH
VKAPVEDIVRYLQRKTVTNELSPAATLVAEAVEDGYKRLMEPAIEREIRNELTEKAEERA
HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHIFAENLRKLLLQPPLKGKTVLGIDPAYRTGCKLAVVDETGKLLRIDVIYPHPPQERKE
HHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCEEEEEECCCCEEEEEEECCCCCHHHHH
EARAKLLRLLDDYHVDMIAIGNGTASRETEQFVADTLKQVERDIFYVIVNEAGASVYSAS
HHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHH
DLARAEFPDLQVEERSAVSIARRVQDPLAELVKIDPKSVGVGQYQHDVSQKKLAESLRFV
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VETVVNQVGVNVNTASVSLLQYVSGLTKTVSENIVKRREEQGKFRSRDELKTIPRLGAKT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH
YEQCIGFLRILDGEEPLDRTPIHPERYAEVKRLLQTLGFTTDAIGSDELRQALQALDIEA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHH
TAAELGIGELTLRDIIDALCRPERDPRDELPKPLLRKDVLKMEDLKPGMELEGTVRNVVD
HHHHCCCCHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
FGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDVAKGRISLSMVSPE
HHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
E
C
>Mature Secondary Structure 
TNEQRLISIIATEQQLTVKQVKNVISLHQEGNTIPFIARYRKEMTGALDEVQIRDVLER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
WEYLQHLERRKEEVIRLVEEQGKLTEELKNAIISATKLQQVEDLYRPYRQKRRTKATIAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKGLEPLADWLLSCPTAPSPNEQAKAFIDDEKGVATVDEALQGAKDIIAERVADDATLRQ
HCCCCHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
WVREQTWRKGTIASTAKAPEKDEKNVYEMYYDYEEPIAKIVPHRVLALNRGEKEEVLRVS
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHCCHHHHHCCCCCHHHHHHHH
VKAPVEDIVRYLQRKTVTNELSPAATLVAEAVEDGYKRLMEPAIEREIRNELTEKAEERA
HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHIFAENLRKLLLQPPLKGKTVLGIDPAYRTGCKLAVVDETGKLLRIDVIYPHPPQERKE
HHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCEEEEEECCCCEEEEEEECCCCCHHHHH
EARAKLLRLLDDYHVDMIAIGNGTASRETEQFVADTLKQVERDIFYVIVNEAGASVYSAS
HHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHH
DLARAEFPDLQVEERSAVSIARRVQDPLAELVKIDPKSVGVGQYQHDVSQKKLAESLRFV
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VETVVNQVGVNVNTASVSLLQYVSGLTKTVSENIVKRREEQGKFRSRDELKTIPRLGAKT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH
YEQCIGFLRILDGEEPLDRTPIHPERYAEVKRLLQTLGFTTDAIGSDELRQALQALDIEA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHH
TAAELGIGELTLRDIIDALCRPERDPRDELPKPLLRKDVLKMEDLKPGMELEGTVRNVVD
HHHHCCCCHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
FGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDVAKGRISLSMVSPE
HHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]