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The map label for this gene is nodB [H]

Identifier: 138893871

GI number: 138893871

Start: 209071

End: 209799

Strand: Direct

Name: nodB [H]

Synonym: GTNG_0195

Alternate gene names: 138893871

Gene position: 209071-209799 (Clockwise)

Preceding gene: 138893869

Following gene: 138893872

Centisome position: 5.89

GC content: 51.85

Gene sequence:

>729_bases
ATGTTGGCATGGCTTGTTGGAGGTTTGATGGTTGGAATCATTGGTTATGGGGTTGTGCCGACAATCGTCATTCGCAAAAA
AAGGTTGCGTCTGTTTTGTGAAGGAACAGCGCCTGACTGCCTTGCTTTGACGTTTGATGACGGTCCCGACCCGTATTATA
CGCCAAAACTGCTCGATTTATTAAAGAAATATGGAGTGAAAGCGACCTTTTTTGTGGTCGGTCGAAAAGTGGAACGCCAT
CCGGAGATCGTGCGGCGGATGGTGGAAGAAGGGCATGAAGTCGGTATTCATAATTACCGTCATATCAGCAACTGGCTGCT
TCCGCCGCTGTGGCTCGATTGGGGAGTGCGTCGGGCGGCTGCGGCGATTGAGCAGGCGACGGGTCAACGTCCGATGTATT
ACCGGCCACCATGGGGCCATTTTAATGCTTGGACGCCGGTCGTGCAAAAACGGTATACAACAGTGTTATGGTCGCATATT
CTTGGTGATTGGAATGAAAAAATCGGTGCGATGGAGCTGTTCCGTCGCTTGCGCGCTGCCGTGCGCGGCGGGGCGGTCAT
CGTGCTTCATGATAACGGGGATGCGCTAGGCGCTAGCAAACGTGCGCCGGAACAAATGTTGTCTGCTCTTGAGCTGCTGC
TCAAAGACGAAGTAGCGAAAAAGATGCGTTGGGTGACGATTACGGAACTGAGAAACGCGCAAACTAACAAACAAATCTCG
TCGATGTGA

Upstream 100 bases:

>100_bases
ATCATCATTAATCTAGCAATTTGTTTAAAAAGAAGATATCCAGTTTCTTAGTTTTTAAAGGAAGGAAATATTGATAAAGT
GCTGTTGAGAGGTGAAGGCG

Downstream 100 bases:

>100_bases
TGGGGGAGCTATGGATACGGGCGCATGGTTGCCTTATGTTCAGTCATATGGATATGTAATGCTGCTTTTGTTTTTATTTT
GCGGCATCGTCGGCATCCCG

Product: chitooligosaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MLAWLVGGLMVGIIGYGVVPTIVIRKKRLRLFCEGTAPDCLALTFDDGPDPYYTPKLLDLLKKYGVKATFFVVGRKVERH
PEIVRRMVEEGHEVGIHNYRHISNWLLPPLWLDWGVRRAAAAIEQATGQRPMYYRPPWGHFNAWTPVVQKRYTTVLWSHI
LGDWNEKIGAMELFRRLRAAVRGGAVIVLHDNGDALGASKRAPEQMLSALELLLKDEVAKKMRWVTITELRNAQTNKQIS
SM

Sequences:

>Translated_242_residues
MLAWLVGGLMVGIIGYGVVPTIVIRKKRLRLFCEGTAPDCLALTFDDGPDPYYTPKLLDLLKKYGVKATFFVVGRKVERH
PEIVRRMVEEGHEVGIHNYRHISNWLLPPLWLDWGVRRAAAAIEQATGQRPMYYRPPWGHFNAWTPVVQKRYTTVLWSHI
LGDWNEKIGAMELFRRLRAAVRGGAVIVLHDNGDALGASKRAPEQMLSALELLLKDEVAKKMRWVTITELRNAQTNKQIS
SM
>Mature_242_residues
MLAWLVGGLMVGIIGYGVVPTIVIRKKRLRLFCEGTAPDCLALTFDDGPDPYYTPKLLDLLKKYGVKATFFVVGRKVERH
PEIVRRMVEEGHEVGIHNYRHISNWLLPPLWLDWGVRRAAAAIEQATGQRPMYYRPPWGHFNAWTPVVQKRYTTVLWSHI
LGDWNEKIGAMELFRRLRAAVRGGAVIVLHDNGDALGASKRAPEQMLSALELLLKDEVAKKMRWVTITELRNAQTNKQIS
SM

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=167, Percent_Identity=32.3353293413174, Blast_Score=72, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6323338, Length=133, Percent_Identity=35.3383458646617, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 27583; Mature: 27583

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAWLVGGLMVGIIGYGVVPTIVIRKKRLRLFCEGTAPDCLALTFDDGPDPYYTPKLLDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCHHHHHH
LKKYGVKATFFVVGRKVERHPEIVRRMVEEGHEVGIHNYRHISNWLLPPLWLDWGVRRAA
HHHHCCCEEEEEECCHHHCCHHHHHHHHHCCHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
AAIEQATGQRPMYYRPPWGHFNAWTPVVQKRYTTVLWSHILGDWNEKIGAMELFRRLRAA
HHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRGGAVIVLHDNGDALGASKRAPEQMLSALELLLKDEVAKKMRWVTITELRNAQTNKQIS
HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SM
CC
>Mature Secondary Structure
MLAWLVGGLMVGIIGYGVVPTIVIRKKRLRLFCEGTAPDCLALTFDDGPDPYYTPKLLDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCHHHHHH
LKKYGVKATFFVVGRKVERHPEIVRRMVEEGHEVGIHNYRHISNWLLPPLWLDWGVRRAA
HHHHCCCEEEEEECCHHHCCHHHHHHHHHCCHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
AAIEQATGQRPMYYRPPWGHFNAWTPVVQKRYTTVLWSHILGDWNEKIGAMELFRRLRAA
HHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRGGAVIVLHDNGDALGASKRAPEQMLSALELLLKDEVAKKMRWVTITELRNAQTNKQIS
HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SM
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]