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The map label for this gene is ybaF [H]

Identifier: 138893814

GI number: 138893814

Start: 142108

End: 142905

Strand: Direct

Name: ybaF [H]

Synonym: GTNG_0135

Alternate gene names: 138893814

Gene position: 142108-142905 (Clockwise)

Preceding gene: 138893813

Following gene: 138893815

Centisome position: 4.0

GC content: 49.87

Gene sequence:

>798_bases
ATGACCAATAATTTGATTATCGGGCAATATGTGCCCGGCCATTCGCTGATCCACCGTTTAGACCCACGCGCGAAGCTGTT
GATCGTGTTTGCCTATGTCCTTATCGTCTTTTTGGCGAACAATGTGGTGACCTATACGGTGTTGTCGTTATTTACGTTCG
TTTTTGCGGCCCTGTCGCGCATCCCGCTTTCGTTCATTATGCGCGGCTTAAAGCCGATTTTATGGGTTGTTTTGTTTACG
ATGTTATTGCATTTATTCATGACGAAAGAAGGGGACGTTGTCTACCGGCTCGGCACCTTTTCGATTTATGAAGGCGGCAT
TCGACAAGGAATCTTTATTTCGTTGCGGTTTTTGCTGCTTGTGCTCATGACGACGATGCTGACGCTGACGACAACGCCCA
TTGAAGTGACCGATGGCGTGGAAAGTTTACTCGGGCCGCTCAAAAAAATGCGCGTGCCCGTCCATGAGCTCGCCTTAATG
ATGGCGATTTCATTGCGATTTATTCCGACACTAATGGAAGAGACAGAAAAAATTATGAAGGCGCAAGCAGCACGTGGTGT
CGATTTTTCCGGCGGTCGTTTTTCCGAGCGGGTGAAAGCGATCGTCTCGCTGCTCGTCCCATTGTTTATCAGTTCGTTTA
AGCGGGCTGATGAGCTGGCAACAGCGATGGAAGCGCGCGGCTACCGGGGCGGGGAAGGACGGACGAAATTTCGTCAACTC
GTCTGGAAGCCGTTGGACACGTCTTTTTTAGTCGCCACCGCGCTGCTGGCTGCATTGCTTTTTCTATTACGTTCATAG

Upstream 100 bases:

>100_bases
GAGCTAGAAAGACGGTTTGGCGTCACCATTCCGTCGCCATGCTTAACGATTGAACAGACGGCTGACGCCATCAAGCAATT
GTTTTCTAAGGTGAGCGTCC

Downstream 100 bases:

>100_bases
CGGAGGACTGCCATGACACGACGAATCAAATGCGTGGTAGCGTATGATGGCACGTATTTTTCCGGCTATCAAGTTCAGCC
GGGAAAACGTACGGTGCAAG

Product: cobalt transport protein CbiQ-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTNNLIIGQYVPGHSLIHRLDPRAKLLIVFAYVLIVFLANNVVTYTVLSLFTFVFAALSRIPLSFIMRGLKPILWVVLFT
MLLHLFMTKEGDVVYRLGTFSIYEGGIRQGIFISLRFLLLVLMTTMLTLTTTPIEVTDGVESLLGPLKKMRVPVHELALM
MAISLRFIPTLMEETEKIMKAQAARGVDFSGGRFSERVKAIVSLLVPLFISSFKRADELATAMEARGYRGGEGRTKFRQL
VWKPLDTSFLVATALLAALLFLLRS

Sequences:

>Translated_265_residues
MTNNLIIGQYVPGHSLIHRLDPRAKLLIVFAYVLIVFLANNVVTYTVLSLFTFVFAALSRIPLSFIMRGLKPILWVVLFT
MLLHLFMTKEGDVVYRLGTFSIYEGGIRQGIFISLRFLLLVLMTTMLTLTTTPIEVTDGVESLLGPLKKMRVPVHELALM
MAISLRFIPTLMEETEKIMKAQAARGVDFSGGRFSERVKAIVSLLVPLFISSFKRADELATAMEARGYRGGEGRTKFRQL
VWKPLDTSFLVATALLAALLFLLRS
>Mature_264_residues
TNNLIIGQYVPGHSLIHRLDPRAKLLIVFAYVLIVFLANNVVTYTVLSLFTFVFAALSRIPLSFIMRGLKPILWVVLFTM
LLHLFMTKEGDVVYRLGTFSIYEGGIRQGIFISLRFLLLVLMTTMLTLTTTPIEVTDGVESLLGPLKKMRVPVHELALMM
AISLRFIPTLMEETEKIMKAQAARGVDFSGGRFSERVKAIVSLLVPLFISSFKRADELATAMEARGYRGGEGRTKFRQLV
WKPLDTSFLVATALLAALLFLLRS

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 29748; Mature: 29617

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNNLIIGQYVPGHSLIHRLDPRAKLLIVFAYVLIVFLANNVVTYTVLSLFTFVFAALSR
CCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPLSFIMRGLKPILWVVLFTMLLHLFMTKEGDVVYRLGTFSIYEGGIRQGIFISLRFLLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCHHHHHHHHHHHHHH
VLMTTMLTLTTTPIEVTDGVESLLGPLKKMRVPVHELALMMAISLRFIPTLMEETEKIMK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQAARGVDFSGGRFSERVKAIVSLLVPLFISSFKRADELATAMEARGYRGGEGRTKFRQL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VWKPLDTSFLVATALLAALLFLLRS
HHCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNNLIIGQYVPGHSLIHRLDPRAKLLIVFAYVLIVFLANNVVTYTVLSLFTFVFAALSR
CCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPLSFIMRGLKPILWVVLFTMLLHLFMTKEGDVVYRLGTFSIYEGGIRQGIFISLRFLLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCHHHHHHHHHHHHHH
VLMTTMLTLTTTPIEVTDGVESLLGPLKKMRVPVHELALMMAISLRFIPTLMEETEKIMK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQAARGVDFSGGRFSERVKAIVSLLVPLFISSFKRADELATAMEARGYRGGEGRTKFRQL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VWKPLDTSFLVATALLAALLFLLRS
HHCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]