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The map label for this gene is recU [H]

Identifier: 13508428

GI number: 13508428

Start: 650402

End: 650920

Strand: Direct

Name: recU [H]

Synonym: MPN528a

Alternate gene names: 13508428

Gene position: 650402-650920 (Clockwise)

Preceding gene: 13508267

Following gene: 13508269

Centisome position: 79.67

GC content: 34.68

Gene sequence:

>519_bases
ATGATTAGCGCTAACCGTGGCATGTTTTTGGAAACAATTGTTAACCAAACAATTGTACGACTAGGAGATCATCCAGATAT
TTGACTCGAAAAGCGTTATCTACCGATTCAACCAACTGCTTTTAAAGAAACCCGTGTGCAAGGAGCATTAACAGCGCAAA
AGAAATCGAAAACTGACTATTAAGGTGTTTATAAAGGCGAAATTTACTTTGACTTTGAAACTAAACAAACTAATAAAAGT
AATTTTGCTCTAGCGCAGTTAGCAGAACACCAACTCAAACACCTTAAAAGAATTAATGAGATTGGTGGTATTAGCTTTTT
GTTAATCTATTTTCAGGTACAAGACCTCTTATATGCGTTGCATACCAAGGATCTCTTGCAGATGATCGAAGCGCAAAAGG
GTAAAAGTAAAACAATTAAGCGTGACCTTATTGATCAAAAAGCACAAAAGATAAATCTAATCTACCCAGGGGTTATAGAT
CTAATTGATGTAATAGAAAACTTTATAAAAGACTCTTAG

Upstream 100 bases:

>100_bases
GTGTTGATTTAATGAAGCAATATGGTAAGTTGCCTAAGGATGAGTTTATCGCTAAAATGCAAAAACTCCATCCTGAACAC
TACCAAAAATAGTTCAAGTT

Downstream 100 bases:

>100_bases
TCTGCGTATTTTCAGCGTACCTTAGCAGCCGTTTCCTTAATGGTTTTGCTTGGACTGTAACGCACTAATGGTTTTGGTGG
AATGTGTTTCATTTCACCAG

Product: penicillin-binding protein-related factor A, recombinase

Products: NA

Alternate protein names: Recombination protein U homolog [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MISANRGMFLETIVNQTIVRLGDHPDIWLEKRYLPIQPTAFKETRVQGALTAQKKSKTDYYGVYKGEIYFDFETKQTNKS
NFALAQLAEHQLKHLKRINEIGGISFLLIYFQVQDLLYALHTKDLLQMIEAQKGKSKTIKRDLIDQKAQKINLIYPGVID
LIDVIENFIKDS

Sequences:

>Translated_172_residues
MISANRGMFLETIVNQTIVRLGDHPDI*LEKRYLPIQPTAFKETRVQGALTAQKKSKTDY*GVYKGEIYFDFETKQTNKS
NFALAQLAEHQLKHLKRINEIGGISFLLIYFQVQDLLYALHTKDLLQMIEAQKGKSKTIKRDLIDQKAQKINLIYPGVID
LIDVIENFIKDS
>Mature_172_residues
MISANRGMFLETIVNQTIVRLGDHPDI*LEKRYLPIQPTAFKETRVQGALTAQKKSKTDY*GVYKGEIYFDFETKQTNKS
NFALAQLAEHQLKHLKRINEIGGISFLLIYFQVQDLLYALHTKDLLQMIEAQKGKSKTIKRDLIDQKAQKINLIYPGVID
LIDVIENFIKDS

Specific function: Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair

COG id: COG3331

COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004612
- InterPro:   IPR011335 [H]

Pfam domain/function: PF03838 RecU [H]

EC number: NA

Molecular weight: Translated: 19521; Mature: 19521

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISANRGMFLETIVNQTIVRLGDHPDILEKRYLPIQPTAFKETRVQGALTAQKKSKTDYG
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
VYKGEIYFDFETKQTNKSNFALAQLAEHQLKHLKRINEIGGISFLLIYFQVQDLLYALHT
EEECEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
KDLLQMIEAQKGKSKTIKRDLIDQKAQKINLIYPGVIDLIDVIENFIKDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MISANRGMFLETIVNQTIVRLGDHPDILEKRYLPIQPTAFKETRVQGALTAQKKSKTDYG
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
VYKGEIYFDFETKQTNKSNFALAQLAEHQLKHLKRINEIGGISFLLIYFQVQDLLYALHT
EEECEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
KDLLQMIEAQKGKSKTIKRDLIDQKAQKINLIYPGVIDLIDVIENFIKDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]