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The map label for this gene is pecT [H]

Identifier: 13474733

GI number: 13474733

Start: 4572798

End: 4573706

Strand: Direct

Name: pecT [H]

Synonym: mlr5687

Alternate gene names: 13474733

Gene position: 4572798-4573706 (Clockwise)

Preceding gene: 13474731

Following gene: 13474736

Centisome position: 64.99

GC content: 67.55

Gene sequence:

>909_bases
ATGACGCTGGACGTAGATGCGGTGAAAGCTTTCGTCGCCGTCGCCGAGTTGCGCAGTTTTACGCGCGCGGCTGAGGCGCT
TGGCAGCACGCAAGGGGCAATCAGCGTCAAGCTGAAGCGGCTGGAGGATCGGATGGGGCAGAGGCTGATCGAGCGGACGC
CGCGACTGGTGCGCCTTTCAGCGCGTGGTGCGGTGTTCCTCGACCCGGCGCGCGAGCTGCTCGCTGCGCACGACCGTGCC
GTCGCCAGTCTCGCCGCTGTTCGCCGCCACTTTCGGCTGGGCATTGCCACCCATGTCGGCGGCGCCGAAGTGCCGACCTT
GCTGGCGCGCCTCAATGCGCATGATCCGGCCTTGACCATCGAGGTGCGGCTCGACGATACGCGCGAGTTGATCGCTGCGT
TCGATCGCGGCGACCTCGATGCCGCGATCGTCCGGCGCGAGGACGACCGCCGCGACGGCGAGGTACTGGCGCCCGAACAT
TTCGGCTGGTACGCCACGCCGGATTTCGTCTACCGCGCCGGCGAGCCACTGCGGCTGGCGGCATCCGCGCCTTCCTGCAG
CATCCGCGACGTCATCACCGGCACGCTCGATGCGGTTGGAATACCGTGGACGCAGGTTTTCCTGGGCTGCGGCTCCTTTG
CCGTTGCCGAGGCCGTTTCCGCCGGCCTGGCCGTCGGGGCCTTCTCGTCTCGCCTGGTTCCGCCCGGCACCATGGAGGTC
AGCCGTAAATTCGGCCTGCCGCCGCTGCCGGCGTCGGAGATCATGCTCTTGTCGACGCTCTCGGACGCTCAATCGCGCGA
TGCATTGCGCACCCTTACCATGGCGTTTCGCGAGCATCGTCCGTTGGCGGGGGCCAACGGCGCGAAACCCCGGTTCCGCA
ATTCGCAGATGGTGGACAGCCCCGTCTGA

Upstream 100 bases:

>100_bases
GGCGGCTCGCTTGTGCTGACGTGACCACGGTAGGTGAGGCTTGATCATTTTGGAATTGCATGGTTGGCTATTTCAGAGAC
AACAAAACGAGATAACTGAC

Downstream 100 bases:

>100_bases
GGCTGTCGACCCGCGTCTGTGCGATGACGCCGAATCTCAGCGATAGTTTTCGACGGCTGAGCGCAGTTGCGGCGTGGCAT
CATTCTCGGTCGGCCGCAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTLDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLSARGAVFLDPARELLAAHDRA
VASLAAVRRHFRLGIATHVGGAEVPTLLARLNAHDPALTIEVRLDDTRELIAAFDRGDLDAAIVRREDDRRDGEVLAPEH
FGWYATPDFVYRAGEPLRLAASAPSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEV
SRKFGLPPLPASEIMLLSTLSDAQSRDALRTLTMAFREHRPLAGANGAKPRFRNSQMVDSPV

Sequences:

>Translated_302_residues
MTLDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLSARGAVFLDPARELLAAHDRA
VASLAAVRRHFRLGIATHVGGAEVPTLLARLNAHDPALTIEVRLDDTRELIAAFDRGDLDAAIVRREDDRRDGEVLAPEH
FGWYATPDFVYRAGEPLRLAASAPSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEV
SRKFGLPPLPASEIMLLSTLSDAQSRDALRTLTMAFREHRPLAGANGAKPRFRNSQMVDSPV
>Mature_301_residues
TLDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLSARGAVFLDPARELLAAHDRAV
ASLAAVRRHFRLGIATHVGGAEVPTLLARLNAHDPALTIEVRLDDTRELIAAFDRGDLDAAIVRREDDRRDGEVLAPEHF
GWYATPDFVYRAGEPLRLAASAPSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEVS
RKFGLPPLPASEIMLLSTLSDAQSRDALRTLTMAFREHRPLAGANGAKPRFRNSQMVDSPV

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=305, Percent_Identity=28.5245901639344, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790399, Length=150, Percent_Identity=29.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994962, Length=147, Percent_Identity=29.9319727891156, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787879, Length=152, Percent_Identity=33.5526315789474, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32554; Mature: 32423

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
ARGAVFLDPARELLAAHDRAVASLAAVRRHFRLGIATHVGGAEVPTLLARLNAHDPALTI
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEE
EVRLDDTRELIAAFDRGDLDAAIVRREDDRRDGEVLAPEHFGWYATPDFVYRAGEPLRLA
EEEECCHHHHHHHHCCCCCCHHEEECCCCCCCCCEECCCCCCCCCCHHHHHCCCCCEEEE
ASAPSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEV
ECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
SRKFGLPPLPASEIMLLSTLSDAQSRDALRTLTMAFREHRPLAGANGAKPRFRNSQMVDS
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PV
CC
>Mature Secondary Structure 
TLDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
ARGAVFLDPARELLAAHDRAVASLAAVRRHFRLGIATHVGGAEVPTLLARLNAHDPALTI
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEE
EVRLDDTRELIAAFDRGDLDAAIVRREDDRRDGEVLAPEHFGWYATPDFVYRAGEPLRLA
EEEECCHHHHHHHHCCCCCCHHEEECCCCCCCCCEECCCCCCCCCCHHHHHCCCCCEEEE
ASAPSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEV
ECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
SRKFGLPPLPASEIMLLSTLSDAQSRDALRTLTMAFREHRPLAGANGAKPRFRNSQMVDS
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]