Click here to switch to the map view.

The map label for this gene is agmR [H]

Identifier: 13474731

GI number: 13474731

Start: 4570468

End: 4571127

Strand: Direct

Name: agmR [H]

Synonym: mlr5684

Alternate gene names: 13474731

Gene position: 4570468-4571127 (Clockwise)

Preceding gene: 13474730

Following gene: 13474733

Centisome position: 64.96

GC content: 64.85

Gene sequence:

>660_bases
TTGCCGTCAGGCTATTCTTTCGTCATCGCCGACGATCACCCGCTGTTTCGCGGTGCGCTGCGCGAGGCGCTTGCCGGCAT
AGGCAATGTCGCCGCCATCCACGAGGCCGGCGATTTCGAAAGCGCCAAGGCGCTGGTCGTGGCCAATGAGGATGTCGATC
TGGTACTGCTCGATTTGTCGATGCCGGGTGCCAGCGGCCTCTCCGGCCTGATCTCGCTGCGCGGCATCCATCCTGCGGTG
CCGCTCATCGTGGTCTCGGCGCATGACGATCCGGCGACCATCCGGCGCGCCCTCGATCTCGGCGCATCCGGTTTCATCTC
CAAATCGGCCAGCATGGAGGAGATCCGCAACGCCGTGCAATTGGTGCTGGCCGGCGACATCGCGGCGCCCGTCGGCGTCG
ATCTCGGCGTCGAGCGCGATCCTGAAATATCGGACCTGATCAAGCGGCTGCAGGCACTGACGCCGCAGCAGACGCGCGTA
CTCGGCATGCTGGCCGAAGGTCTGCTCAACAAGCAGATCGCCTATGAGCTCGGCGTCTCCGAGGCGACCATCAAGGCGCA
TGTCTCGGCCATCCTGCAGAAGCTCGGCGTCGACAGCCGCACCCAGGCGGTGATCCTTCTGTCCAAGATCGGCACCGACC
CGTTGCAGGCCAACGGCTGA

Upstream 100 bases:

>100_bases
GCGCTGGTTTTGCCGCTTGAAAACAGCGCGCGGCCTCTCATAATCGTCCGGCTGGTCCCGAAAAGCTTAAAAATCATCGA
CGGGATTCGGGGAGGAACAT

Downstream 100 bases:

>100_bases
GTGCCTGCGTCGCCCGTTCAATCGGGACACTGAACCTCTGTCTGCACCCTCCGGGCGTTGAAGCTCACAAAGCTGATGGC
GGCCATGATCCAGACGCCGA

Product: two-component system, response regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MPSGYSFVIADDHPLFRGALREALAGIGNVAAIHEAGDFESAKALVVANEDVDLVLLDLSMPGASGLSGLISLRGIHPAV
PLIVVSAHDDPATIRRALDLGASGFISKSASMEEIRNAVQLVLAGDIAAPVGVDLGVERDPEISDLIKRLQALTPQQTRV
LGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLSKIGTDPLQANG

Sequences:

>Translated_219_residues
MPSGYSFVIADDHPLFRGALREALAGIGNVAAIHEAGDFESAKALVVANEDVDLVLLDLSMPGASGLSGLISLRGIHPAV
PLIVVSAHDDPATIRRALDLGASGFISKSASMEEIRNAVQLVLAGDIAAPVGVDLGVERDPEISDLIKRLQALTPQQTRV
LGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLSKIGTDPLQANG
>Mature_218_residues
PSGYSFVIADDHPLFRGALREALAGIGNVAAIHEAGDFESAKALVVANEDVDLVLLDLSMPGASGLSGLISLRGIHPAVP
LIVVSAHDDPATIRRALDLGASGFISKSASMEEIRNAVQLVLAGDIAAPVGVDLGVERDPEISDLIKRLQALTPQQTRVL
GMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLSKIGTDPLQANG

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=218, Percent_Identity=35.3211009174312, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1786747, Length=194, Percent_Identity=28.8659793814433, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788546, Length=224, Percent_Identity=27.6785714285714, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=32.3232323232323, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788222, Length=195, Percent_Identity=25.6410256410256, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788712, Length=194, Percent_Identity=28.3505154639175, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787473, Length=210, Percent_Identity=30, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22808; Mature: 22676

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSGYSFVIADDHPLFRGALREALAGIGNVAAIHEAGDFESAKALVVANEDVDLVLLDLS
CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCEEEEEEC
MPGASGLSGLISLRGIHPAVPLIVVSAHDDPATIRRALDLGASGFISKSASMEEIRNAVQ
CCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
LVLAGDIAAPVGVDLGVERDPEISDLIKRLQALTPQQTRVLGMLAEGLLNKQIAYELGVS
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
EATIKAHVSAILQKLGVDSRTQAVILLSKIGTDPLQANG
HHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
PSGYSFVIADDHPLFRGALREALAGIGNVAAIHEAGDFESAKALVVANEDVDLVLLDLS
CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCEEEEEEC
MPGASGLSGLISLRGIHPAVPLIVVSAHDDPATIRRALDLGASGFISKSASMEEIRNAVQ
CCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
LVLAGDIAAPVGVDLGVERDPEISDLIKRLQALTPQQTRVLGMLAEGLLNKQIAYELGVS
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
EATIKAHVSAILQKLGVDSRTQAVILLSKIGTDPLQANG
HHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]